Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000681g0090 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-49 199.5 90 100.0
CAN.G421.3 Capsicum annuum HOM05D000024 ORTHO05D000006 2.4e-12 75.5 90 40.0
Nitab4.5_0000912g0140 Nicotiana tabacum HOM05D000024 ORTHO05D000006 1.2e-08 63.2 37 67.6
HanXRQChr00c0504g0575321 Helianthus annuus HOM05D000533 ORTHO05D001069 2.7e-08 62.0 84 44.0
Nitab4.5_0001478g0210 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.0e-08 60.8 101 41.6
Sopen00g001100 Solanum pennellii HOM05D000003 ORTHO05D000004 1.7e-07 59.3 47 59.6
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 3.9e-07 58.2 36 77.8
Sopen08g017350 Solanum pennellii HOM05D000047 ORTHO05D000589 6.6e-07 57.4 37 62.2
Sopen06g013970 Solanum pennellii HOM05D000003 ORTHO05D000004 1.1e-06 56.6 38 60.5
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
Haze_22013 Corylus avellana HOM05D000001 ORTHO05D000003 1.5e-06 56.2 26 100.0
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
FAN01G2373 Fragaria x ananassa HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQChr09g0251511 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
Lsat_1_v5_gn_9_115440 Lactuca sativa HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
Lsat_1_v5_gn_9_49240 Lactuca sativa HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
Peaxi162Scf00030g02114 Petunia axillaris HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
Peaxi162Scf01018g00211 Petunia axillaris HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
RhsimPtG0005000 Rhododendron simsii HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 1.5e-06 56.2 26 100.0
ClCG10G006000 Citrullus lanatus HOM05D000533 ORTHO05D001069 1.9e-06 55.8 26 96.2
MELO3C027054.2 Cucumis melo HOM05D000533 ORTHO05D001069 1.9e-06 55.8 26 96.2
Nn1g08631 Nelumbo nucifera HOM05D000533 ORTHO05D001069 1.9e-06 55.8 26 96.2
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 1.9e-06 55.8 26 96.2
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 3.3e-06 55.1 36 75.0
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 3.3e-06 55.1 36 75.0
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 3.3e-06 55.1 36 75.0
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.3e-06 55.1 26 96.2
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.3e-06 55.1 26 96.2
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.3e-06 55.1 26 96.2
Sopen09g030960 Solanum pennellii HOM05D000003 ORTHO05D000004 3.3e-06 55.1 36 61.1
Gohir.A13G086335 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.3e-06 54.7 26 96.2
Sopen06g013950 Solanum pennellii HOM05D000003 ORTHO05D000004 4.3e-06 54.7 36 61.1
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 5.6e-06 54.3 26 96.2
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
arahy.Tifrunner.gnm1.ann1.G8ZYC2 Arachis hypogaea HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
arahy.Tifrunner.gnm1.ann1.URY1CV Arachis hypogaea HOM05D000533 ORTHO05D011117 5.6e-06 54.3 26 96.2
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
EL10Ac9g21011 Beta vulgaris HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
COL.COLO4_01565 Corchorus olitorius HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
Nitab4.5_0006409g0060 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.6e-06 54.3 25 100.0
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
Sed0009234 Sechium edule HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
Sed0014804 Sechium edule HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 96.2
Sopen00g003390 Solanum pennellii HOM05D000003 ORTHO05D000004 5.6e-06 54.3 36 61.1
PGSC0003DMG401008783 Solanum tuberosum HOM05D000533 ORTHO05D001069 5.6e-06 54.3 26 92.3
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 7.3e-06 53.9 26 96.2
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 7.3e-06 53.9 26 96.2
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 7.3e-06 53.9 26 96.2
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 7.3e-06 53.9 26 96.2
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 7.3e-06 53.9 26 96.2
Nitab4.5_0006502g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 7.3e-06 53.9 26 96.2
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 7.3e-06 53.9 26 92.3
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 7.3e-06 53.9 26 92.3
SalBow1G1175 Salvia bowleyana HOM05D000533 ORTHO05D001069 7.3e-06 53.9 26 96.2
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 9.6e-06 53.5 34 73.5


User provided reference genes

Program Settings