Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000678g0090 Nicotiana tabacum HOM05D004397 ORTHO05D005271 2.3e-44 181.8 88 100.0
Nitab4.5_0014148g0010 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.3e-31 139.4 80 82.5
Nitab4.5_0003501g0040 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.8e-31 137.9 80 80.0
Nitab4.5_0006802g0080 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.1e-30 136.3 81 80.2
Nitab4.5_0003603g0020 Nicotiana tabacum HOM05D004397 ORTHO05D005271 7.1e-30 133.7 81 80.2
Nitab4.5_0003508g0010 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.6e-29 132.5 86 75.6
Nitab4.5_0002335g0060 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.0e-28 128.3 86 74.4
CiPaw.09G097700 Carya illinoinensis HOM05D004397 ORTHO05D005271 1.1e-27 126.3 86 72.1
CiPaw.10G074300 Carya illinoinensis HOM05D004397 ORTHO05D005271 1.5e-27 125.9 86 70.9
Peaxi162Scf01073g00117 Petunia axillaris HOM05D004397 ORTHO05D005271 1.5e-27 125.9 86 73.3
Cpa.g.sc152.55 Carica papaya HOM05D004397 ORTHO05D005271 2.5e-27 125.2 86 70.9
SGA_v2.0_scaffold543G52819 Striga asiatica HOM05D004397 ORTHO05D005271 3.3e-27 124.8 86 72.1
MSTRG.1068 Avicennia marina HOM05D004397 ORTHO05D005271 4.3e-27 124.4 86 70.9
Cfa000163 Carpinus fangiana HOM05D004397 ORTHO05D005271 4.3e-27 124.4 86 72.1
Haze_06856 Corylus avellana HOM05D004397 ORTHO05D005271 4.3e-27 124.4 86 72.1
Thecc.06G227900 Theobroma cacao HOM05D004397 ORTHO05D005271 4.3e-27 124.4 86 72.1
QL03p004896 Quercus lobata HOM05D004397 ORTHO05D005271 5.6e-27 124.0 86 72.1
QL05p071977 Quercus lobata HOM05D004397 ORTHO05D005271 5.6e-27 124.0 86 72.1
Solyc12g088730.2 Solanum lycopersicum HOM05D004397 ORTHO05D005271 5.6e-27 124.0 86 72.1
Sopen12g030630 Solanum pennellii HOM05D004397 ORTHO05D005271 5.6e-27 124.0 86 72.1
PGSC0003DMG400015407 Solanum tuberosum HOM05D004397 ORTHO05D005271 5.6e-27 124.0 86 72.1
Dinv12378 Davidia involucrata HOM05D004397 ORTHO05D005271 7.4e-27 123.6 86 70.9
GSVIVG01004810001 Vitis vinifera HOM05D004397 ORTHO05D005271 7.4e-27 123.6 86 70.9
Duzib192G0217 Durio zibethinus HOM05D004397 ORTHO05D005271 1.3e-26 122.9 86 70.9
Nn1g07269 Nelumbo nucifera HOM05D004397 ORTHO05D005271 1.3e-26 122.9 86 69.8
Hma1.2p1_0226F.1_g095780 Hydrangea macrophylla HOM05D004397 ORTHO05D005271 2.1e-26 122.1 86 70.9
arahy.Tifrunner.gnm1.ann1.K9NX2S Arachis hypogaea HOM05D004397 ORTHO05D005271 2.8e-26 121.7 86 70.9
TPR.G34683 Trifolium pratense HOM05D004397 ORTHO05D005271 2.8e-26 121.7 87 70.1
Nitab4.5_0006174g0030 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.7e-26 121.3 70 85.7
Sed0027185 Sechium edule HOM05D004397 ORTHO05D005271 3.7e-26 121.3 86 72.1
CsaV3_6G048740 Cucumis sativus L. HOM05D004397 ORTHO05D005271 4.8e-26 120.9 86 69.8
Potri.004G004800 Populus trichocarpa HOM05D004397 ORTHO05D005271 4.8e-26 120.9 86 70.9
Prupe.2G035900 Prunus persica HOM05D004397 ORTHO05D005271 4.8e-26 120.9 86 69.8
Sed0005973 Sechium edule HOM05D004397 ORTHO05D005271 4.8e-26 120.9 86 70.9
MSTRG.25075 Avicennia marina HOM05D004397 ORTHO05D005271 6.2e-26 120.6 86 69.8
Lj4A769T44 Lonicera japonica HOM05D004397 ORTHO05D005271 6.2e-26 120.6 86 68.6
Oeu023826.3 Olea europaea HOM05D004397 ORTHO05D005271 6.2e-26 120.6 86 68.6
THA.LOC104809478 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 6.2e-26 120.6 86 69.8
HanXRQChr01g0014371 Helianthus annuus HOM05D004397 ORTHO05D005271 8.2e-26 120.2 86 70.9
MD05G1352400 Malus domestica HOM05D004397 ORTHO05D005271 1.1e-25 119.8 86 70.9
MD10G1326400 Malus domestica HOM05D004397 ORTHO05D005271 1.1e-25 119.8 86 70.9
CSS0021903 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 1.4e-25 119.4 86 69.8
CSS0044102 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 1.4e-25 119.4 86 69.8
Medtr3g107920 Medicago truncatula HOM05D004397 ORTHO05D005271 1.4e-25 119.4 86 68.6
DCAR_019438 Daucus carota HOM05D004397 ORTHO05D005271 1.8e-25 119.0 86 69.8
TAR626G0623 Trochodendron aralioides HOM05D004397 ORTHO05D005271 1.8e-25 119.0 86 68.6
Cc10_g04670 Coffea canephora HOM05D004397 ORTHO05D005271 2.4e-25 118.6 86 69.8
PGR004G1068 Punica granatum HOM05D004397 ORTHO05D005271 2.4e-25 118.6 86 69.8
Ca_00691_v3 Cicer arietinum L. HOM05D004397 ORTHO05D005271 3.1e-25 118.2 84 70.2
DCAR_002834 Daucus carota HOM05D004397 ORTHO05D005271 4.0e-25 117.9 86 68.6
Migut.N02747 Erythranthe guttata HOM05D004397 ORTHO05D005271 4.0e-25 117.9 86 68.6
Atru.chr10.2278 Acer truncatum HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 69.8
Aa31LG8G17020 Aethionema arabicum HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
BcaB08g34896 Brassica carinata HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
BcaC07g41228 Brassica carinata HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
A09p59050 Brassica napus HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
C08p42330 Brassica napus HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
BolC8t51793H Brassica oleracea HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
BraA09t41289Z Brassica rapa HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
COL.COLO4_31830 Corchorus olitorius HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
Migut.L00082 Erythranthe guttata HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
FvH4_3g01410 Fragaria vesca HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 67.4
FAN21G0257 Fragaria x ananassa HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 67.4
FAN25G3034 Fragaria x ananassa HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 67.4
Manes.16G003100 Manihot esculenta HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 67.4
Phvul.010G046600 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 5.3e-25 117.5 86 68.6
BcaC06g36686 Brassica carinata HOM05D004397 ORTHO05D005271 6.9e-25 117.1 86 67.4
A07p00590 Brassica napus HOM05D004397 ORTHO05D005271 6.9e-25 117.1 86 67.4
C07p01050 Brassica napus HOM05D004397 ORTHO05D005271 6.9e-25 117.1 86 67.4
BolC7t40544H Brassica oleracea HOM05D004397 ORTHO05D005271 6.9e-25 117.1 86 67.4
BraA07t27855Z Brassica rapa HOM05D004397 ORTHO05D005271 6.9e-25 117.1 86 67.4
Phvul.006G146000 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 6.9e-25 117.1 86 68.6
Glyma.09G007300 Glycine max HOM05D004397 ORTHO05D005271 9.0e-25 116.7 86 67.4
Sp3g33370 Schrenkiella parvula HOM05D004397 ORTHO05D005271 9.0e-25 116.7 86 67.4
TAR629G1518 Trochodendron aralioides HOM05D004397 ORTHO05D005271 9.0e-25 116.7 86 67.4
Sc16g0006660 Simmondsia chinensis HOM05D004397 ORTHO05D005271 1.2e-24 116.3 86 67.4
Gohir.A05G173000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 1.5e-24 115.9 86 67.4
Gohir.A06G150933 Gossypium hirsutum HOM05D004397 ORTHO05D005271 1.5e-24 115.9 80 68.8
Gohir.D05G176000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 1.5e-24 115.9 86 67.4
Gorai.009G181400 Gossypium raimondii HOM05D004397 ORTHO05D005271 1.5e-24 115.9 86 67.4
PSO063G2973 Papaver somniferum HOM05D004397 ORTHO05D005271 1.5e-24 115.9 86 67.4
PSO782G1961 Papaver somniferum HOM05D004397 ORTHO05D005271 1.5e-24 115.9 86 67.4
RcHm_v2.0_Chr5g0002131 Rosa chinensis HOM05D004397 ORTHO05D005271 1.5e-24 115.9 86 66.3
Sabra04G0002500 Salix brachista HOM05D004397 ORTHO05D005271 1.5e-24 115.9 86 68.6
THA.LOC104823539 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 1.5e-24 115.9 86 67.4
unitig_37.g12949 Utricularia gibba HOM05D004397 ORTHO05D005271 2.0e-24 115.5 86 67.4
AT2G20060 Arabidopsis thaliana HOM05D004397 ORTHO05D005271 2.6e-24 115.2 86 66.3
Glyma.15G111700 Glycine max HOM05D004397 ORTHO05D005271 2.6e-24 115.2 86 66.3
Lalb_Chr20g0118941 Lupinus albus HOM05D004397 ORTHO05D005271 2.6e-24 115.2 86 67.4
Psat5g077520 Pisum sativum HOM05D004397 ORTHO05D005271 2.6e-24 115.2 86 66.3
VMungo0540G2306 Vigna mungo HOM05D004397 ORTHO05D005271 2.6e-24 115.2 86 66.3
Aqoxy1G03506 Aquilegia oxysepala HOM05D004397 ORTHO05D005271 3.4e-24 114.8 86 65.1
Thhalv10002043m.g Eutrema salsugineum HOM05D004397 ORTHO05D005271 3.4e-24 114.8 86 67.4
Rhsim04G0075400 Rhododendron simsii HOM05D004397 ORTHO05D005271 3.4e-24 114.8 86 65.1
Carub.0003s3434 Capsella rubella HOM05D004397 ORTHO05D005271 4.5e-24 114.4 86 66.3
ClCG01G021700 Citrullus lanatus HOM05D004397 ORTHO05D005271 4.5e-24 114.4 82 70.7
Nitab4.5_0003290g0070 Nicotiana tabacum HOM05D004397 ORTHO05D005271 7.6e-24 113.6 88 64.8
AL3G48030 Arabidopsis lyrata HOM05D004397 ORTHO05D005271 1.0e-23 113.2 86 65.1
CDE03G0208 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 1.0e-23 113.2 86 67.4
CDE06G0724 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 1.0e-23 113.2 86 67.4
SalBow7G1927 Salvia bowleyana HOM05D004397 ORTHO05D005271 1.0e-23 113.2 86 68.6
CARHR110570 Cardamine hirsuta HOM05D004397 ORTHO05D005271 1.3e-23 112.8 86 65.1
ECA236G1813 Erigeron canadensis HOM05D004397 ORTHO05D005271 1.3e-23 112.8 86 67.4
vmacro09207 Vaccinium macrocarpon HOM05D004397 ORTHO05D005271 1.3e-23 112.8 89 62.9
Peaxi162Scf01027g00012 Petunia axillaris HOM05D004397 ORTHO05D005271 2.2e-23 112.1 92 62.0
Hund00398 Selenicereus undatus HOM05D004397 ORTHO05D005271 2.2e-23 112.1 86 65.1
TWI38G0690 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 2.2e-23 112.1 86 66.3
Lsat_1_v5_gn_4_51441 Lactuca sativa HOM05D004397 ORTHO05D005271 2.9e-23 111.7 86 66.3
Zm00001eb061360 Zea mays HOM05D004397 ORTHO05D005271 2.9e-23 111.7 86 66.3
Eucgr.G00454 Eucalyptus grandis HOM05D004397 ORTHO05D005271 3.8e-23 111.3 86 64.0
ATR0307G084 Amborella trichopoda HOM05D004397 ORTHO05D005271 4.9e-23 110.9 86 64.0
MBI05_g10534_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 4.9e-23 110.9 86 66.3
Os11g0585700 Oryza sativa ssp. japonica HOM05D004397 ORTHO05D005271 6.5e-23 110.5 86 65.1
MBI05_g23392_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 8.4e-23 110.2 84 66.7
TWI63G0777 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 1.4e-22 109.4 86 66.3
AUR62008935 Chenopodium quinoa HOM05D004397 ORTHO05D005271 4.2e-22 107.8 82 65.9
Lj6g0022899 Lotus japonicus HOM05D004397 ORTHO05D005271 5.5e-22 107.5 81 66.7
EL10Ac7g17869 Beta vulgaris HOM05D004397 ORTHO05D005271 9.3e-22 106.7 81 65.4
HPP92_018530 Vanilla planifolia HOM05D004397 ORTHO05D005271 2.1e-21 105.5 86 62.8
Ah.08g214470 Amaranthus hybridus HOM05D004397 ORTHO05D005271 1.0e-20 103.2 81 63.0
SHI04147 Sapria himalayana HOM05D004397 ORTHO05D005271 3.9e-20 101.3 86 62.8
BcaB03g16800 Brassica carinata HOM05D004397 ORTHO05D005271 9.7e-19 96.7 72 68.1
SGA_v2.0_scaffold404G51008 Striga asiatica HOM05D004397 ORTHO05D005271 8.2e-18 93.6 51 82.4
Nitab4.5_0004376g0020 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.8e-17 92.4 66 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2975 Anthoceros agrestis HOM05D004397 ORTHO05D005271 6.9e-17 90.5 96 56.2
Mapoly0162s0019 Marchantia polymorpha HOM05D004397 ORTHO05D005271 1.2e-16 89.7 86 55.8
Nitab4.5_0002335g0080 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.5e-16 89.4 83 60.2
CAN.G1194.11 Capsicum annuum HOM05D004397 ORTHO05D005271 2.6e-16 88.6 66 69.7
Pp3c13_15330 Physcomitrium patens HOM05D004397 ORTHO05D005271 1.0e-15 86.7 86 54.7
CBR_g40797 Chara braunii HOM05D004397 ORTHO05D005271 1.7e-15 85.9 86 54.7
Oeu012435.1 Olea europaea HOM05D004397 ORTHO05D005271 2.9e-15 85.1 64 68.8
Actinidia22115 Actinidia chinensis HOM05D004397 ORTHO05D005271 6.5e-15 84.0 64 68.8
SMO116G0021 Selaginella moellendorffii HOM05D004397 ORTHO05D005271 6.5e-15 84.0 83 51.8
AUR62001111 Chenopodium quinoa HOM05D004397 ORTHO05D005271 2.5e-14 82.0 67 64.2
BcaB06g28897 Brassica carinata HOM05D004397 ORTHO05D005271 7.9e-13 77.0 64 62.5
MELO3C007416.2 Cucumis melo HOM05D004397 ORTHO05D005271 5.1e-12 74.3 40 82.5
Lsat_1_v5_gn_7_66500 Lactuca sativa HOM05D004397 ORTHO05D005271 4.1e-09 64.7 40 70.0
Gorai.010G183700 Gossypium raimondii HOM05D004397 ORTHO05D005271 9.1e-09 63.5 52 65.4
Actinidia30586 Actinidia chinensis HOM05D004397 ORTHO05D005271 7.7e-08 60.5 41 68.3
Aa31LG4G11630 Aethionema arabicum HOM05D008081 ORTHO05D010223 1.3e-07 59.7 37 75.7
Gohir.D06G157201 Gossypium hirsutum HOM05D004397 ORTHO05D005271 1.3e-07 59.7 36 77.8
Migut.O00819 Erythranthe guttata HOM05D004397 ORTHO05D005271 8.5e-07 57.0 51 58.8
Prupe.4G015300 Prunus persica HOM05D004397 ORTHO05D005271 8.5e-07 57.0 37 70.3
Cre12.g520400 Chlamydomonas reinhardtii HOM05D004397 ORTHO05D005271 2.5e-06 55.5 80 36.2
Lsat_1_v5_gn_2_18501 Lactuca sativa HOM05D004397 ORTHO05D005271 7.2e-06 53.9 35 68.6


User provided reference genes

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