Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 1.1e-198 696.4 365 100.0
PGSC0003DMG400029827 Solanum tuberosum HOM05D029882 ORTHO05D037717 7.0e-63 245.4 315 53.3
Nitab4.5_0000677g0220 Nicotiana tabacum HOM05D017238 ORTHO05D009536 3.5e-46 189.9 281 50.5
Sopen10g030520 Solanum pennellii HOM05D029882 ORTHO05D037717 8.6e-29 132.1 173 49.1
Solyc10g079900.3 Solanum lycopersicum HOM05D029882 ORTHO05D037717 2.8e-27 127.1 173 47.4
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 4.0e-18 96.7 182 38.5
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 6.4e-16 89.4 315 29.8
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 2.1e-14 84.3 178 36.5
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 3.0e-13 80.5 586 23.7
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 6.6e-13 79.3 584 24.3
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 8.6e-13 79.0 94 54.3
PGSC0003DMG400012697 Solanum tuberosum HOM05D017238 ORTHO05D009536 9.6e-12 75.5 178 35.4
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 1.2e-11 75.1 79 54.4
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 4.7e-11 73.2 205 34.1
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 1.1e-10 72.0 87 50.6
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 3.1e-10 70.5 79 51.9
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 3.1e-10 70.5 75 52.0
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 4.0e-10 70.1 85 45.9
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 5.2e-10 69.7 82 48.8
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 5.2e-10 69.7 77 53.2
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 6.8e-10 69.3 85 48.2
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 8.9e-10 68.9 85 49.4
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 1.5e-09 68.2 85 47.1
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 2.0e-09 67.8 85 47.1
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 2.0e-09 67.8 85 45.9
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 4.4e-09 66.6 85 45.9
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 4.4e-09 66.6 85 45.9
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 4.4e-09 66.6 76 48.7
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 4.4e-09 66.6 112 42.0
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 5.8e-09 66.2 78 50.0
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 7.6e-09 65.9 85 45.9
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 7.6e-09 65.9 85 45.9
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 7.6e-09 65.9 80 47.5
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 1.3e-08 65.1 85 43.5
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 1.3e-08 65.1 79 48.1
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 1.3e-08 65.1 79 48.1
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 2.9e-08 63.9 85 45.9
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 3.8e-08 63.5 87 42.5
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 4.9e-08 63.2 112 39.3
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 6.4e-08 62.8 83 43.4
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 8.4e-08 62.4 85 43.5
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 8.4e-08 62.4 79 44.3
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 1.1e-07 62.0 99 40.4
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 1.1e-07 62.0 76 48.7
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 2.4e-07 60.8 84 45.2
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 3.2e-07 60.5 164 33.5
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 4.2e-07 60.1 91 40.7
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 4.2e-07 60.1 142 35.9
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 4.2e-07 60.1 85 40.0
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 5.4e-07 59.7 281 26.7
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 7.1e-07 59.3 90 44.4
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 7.1e-07 59.3 83 41.0
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 9.3e-07 58.9 87 41.4
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 1.2e-06 58.5 78 46.2
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 1.2e-06 58.5 76 47.4
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 1.6e-06 58.2 83 43.4
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 2.7e-06 57.4 104 38.5
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 3.5e-06 57.0 89 39.3
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 4.6e-06 56.6 83 43.4
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 6.0e-06 56.2 191 30.4
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 7.8e-06 55.8 105 37.1
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 7.8e-06 55.8 86 41.9


User provided reference genes

Program Settings