Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.8e-126 455.3 233 100.0
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.9e-78 295.0 156 96.8
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.9e-78 295.0 231 70.6
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.3e-75 287.0 231 68.8
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.9e-74 283.1 234 67.9
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.2e-70 269.6 230 61.7
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 3.8e-70 268.9 268 60.1
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 8.4e-70 267.7 230 61.7
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.1e-68 263.1 230 60.9
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.9e-67 258.8 172 76.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 7.3e-66 254.6 229 59.0
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-65 253.8 228 61.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.1e-65 253.1 161 77.6
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 4.0e-64 248.8 150 82.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.6e-63 246.1 182 69.2
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.6e-63 246.1 150 80.7
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.5e-63 245.4 145 83.4
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 5.8e-63 245.0 147 83.0
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 9.9e-63 244.2 162 76.5
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.3e-62 243.8 150 79.3
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 2.2e-62 243.0 195 70.8
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.9e-62 242.7 149 79.9
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.9e-62 242.7 143 83.2
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 2.9e-62 242.7 151 80.8
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 3.8e-62 242.3 151 79.5
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.9e-62 241.9 170 73.5
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 4.9e-62 241.9 170 73.5
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.1e-61 240.7 148 79.1
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.4e-61 240.4 170 72.9
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.9e-61 240.0 150 79.3
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 5.4e-61 238.4 161 73.9
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 7.1e-61 238.0 188 67.0
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.6e-60 236.9 150 78.7
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.6e-60 236.9 148 78.4
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.6e-60 236.9 148 79.1
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.7e-60 236.1 174 69.5
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.5e-60 235.7 152 76.3
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.0e-59 234.2 147 75.5
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.3e-59 233.8 146 77.4
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.8e-59 233.4 147 78.2
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.8e-59 233.4 158 73.4
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.8e-59 233.4 155 74.8
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.0e-59 232.6 149 77.2
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.9e-59 232.3 149 74.5
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 3.9e-59 232.3 145 76.6
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 5.1e-59 231.9 147 78.2
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 6.7e-59 231.5 143 79.0
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 6.7e-59 231.5 175 68.6
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 6.7e-59 231.5 158 74.1
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 8.7e-59 231.1 147 77.6
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.5e-58 230.3 144 81.2
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.9e-58 229.9 180 66.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 2.5e-58 229.6 146 76.0
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 2.5e-58 229.6 156 73.1
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 4.3e-58 228.8 151 76.8
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 5.6e-58 228.4 149 74.5
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 7.4e-58 228.0 143 76.2
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 9.6e-58 227.6 144 77.8
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 9.6e-58 227.6 183 63.4
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.3e-57 227.3 146 75.3
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.3e-57 227.3 168 68.5
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 1.6e-57 226.9 188 63.3
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.8e-57 226.1 187 63.6
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.7e-57 225.7 154 73.4
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 4.8e-57 225.3 143 79.0
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 4.8e-57 225.3 236 55.1
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 8.1e-57 224.6 149 72.5
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 8.1e-57 224.6 137 78.8
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 8.1e-57 224.6 147 73.5
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.1e-56 224.2 147 74.1
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.1e-56 224.2 147 74.1
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.1e-56 224.2 147 74.1
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.1e-56 224.2 147 74.1
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.1e-56 224.2 147 74.1
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.1e-56 224.2 146 76.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.4e-56 223.8 143 74.8
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.8e-56 223.4 146 75.3
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.8e-56 223.4 150 71.3
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.4e-56 223.0 147 74.1
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 3.1e-56 222.6 147 73.5
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 5.3e-56 221.9 146 74.0
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 6.9e-56 221.5 241 54.8
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 6.9e-56 221.5 143 75.5
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.5e-55 218.8 143 74.1
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 4.5e-55 218.8 146 73.3
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 4.5e-55 218.8 152 69.7
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 5.8e-55 218.4 146 72.6
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 5.8e-55 218.4 162 66.7
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 7.6e-55 218.0 153 68.6
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.7e-54 216.9 151 72.8
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.7e-54 216.9 148 70.3
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 2.9e-54 216.1 146 68.5
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 3.8e-54 215.7 143 73.4
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 6.4e-54 214.9 160 66.9
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 6.4e-54 214.9 146 71.9
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 6.4e-54 214.9 146 71.9
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 8.4e-54 214.5 159 66.7
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 8.4e-54 214.5 159 66.7
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 8.4e-54 214.5 150 69.3
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.1e-53 214.2 151 68.2
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.9e-53 213.4 146 72.6
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.2e-53 212.6 145 70.3
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 3.2e-53 212.6 151 67.5
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 4.2e-53 212.2 147 69.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 4.2e-53 212.2 146 71.2
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 4.2e-53 212.2 151 67.5
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 7.1e-53 211.5 161 66.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.1e-53 211.5 146 72.6
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 9.3e-53 211.1 153 68.6
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.6e-52 210.3 158 66.5
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.6e-52 210.3 166 65.1
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 2.7e-52 209.5 146 69.2
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.6e-52 208.8 189 58.7
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 7.9e-52 208.0 148 66.9
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 7.9e-52 208.0 166 63.9
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.3e-51 206.5 159 65.4
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.3e-51 206.5 146 68.5
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 5.1e-51 205.3 148 68.2
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.1e-51 205.3 147 74.1
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 7.4e-50 201.4 141 67.4
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.1e-49 199.9 149 69.8
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 8.2e-49 198.0 149 65.1
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 5.8e-47 191.8 119 75.6
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 8.4e-46 188.0 147 60.5
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.1e-43 178.7 122 71.3
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.9e-42 176.8 137 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.3e-42 175.6 139 59.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 5.7e-42 175.3 141 59.6
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.6e-41 173.7 139 55.4
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.4e-40 169.9 106 80.2
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 5.0e-38 162.2 106 78.3
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 8.5e-38 161.4 127 70.1
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.7e-36 156.4 102 76.5
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.9e-36 154.8 129 62.8
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 8.7e-35 151.4 146 57.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 8.7e-35 151.4 147 58.5
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 3.3e-34 149.4 106 68.9
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.4e-32 144.1 105 67.6
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 6.9e-32 141.7 147 51.7
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.4e-29 134.0 147 51.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 2.6e-26 123.2 77 81.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.8e-24 117.1 160 46.2
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-24 117.1 163 42.3
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.2e-19 99.0 79 59.5
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.7e-19 98.6 138 39.9
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.1e-16 91.3 216 27.8
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.4e-16 90.9 131 37.4
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.9e-14 83.2 93 51.6
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.5e-13 80.9 153 34.0
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.8e-11 73.9 150 33.3
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.0e-11 72.8 145 33.1
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.6e-10 70.1 122 32.8
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 9.7e-10 68.2 94 43.6


User provided reference genes

Program Settings