Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 7.2e-86 320.5 155 100.0
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 5.0e-18 95.1 48 97.9
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.1e-17 94.0 49 93.9
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 2.5e-17 92.8 48 95.8
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 2.5e-17 92.8 48 95.8
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.2e-17 92.0 48 95.8
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 7.1e-17 91.3 48 93.8
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.2e-16 90.5 48 93.8
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.2e-16 90.5 48 93.8
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.2e-16 90.5 48 93.8
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 1.2e-16 90.5 47 95.7
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.2e-16 90.5 48 93.8
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.2e-16 90.5 48 93.8
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.1e-16 89.7 48 91.7
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.1e-16 89.7 48 91.7
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.7e-16 89.4 48 91.7
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 2.7e-16 89.4 48 91.7
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.7e-16 89.4 47 93.6
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 2.7e-16 89.4 48 91.7
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 2.7e-16 89.4 48 91.7
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 2.7e-16 89.4 48 91.7
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 3.5e-16 89.0 48 91.7
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 4.6e-16 88.6 48 91.7
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 4.6e-16 88.6 48 91.7
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 6.1e-16 88.2 63 74.6
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 6.1e-16 88.2 48 91.7
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 6.1e-16 88.2 48 89.6
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 6.1e-16 88.2 48 89.6
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 6.1e-16 88.2 48 91.7
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 7.9e-16 87.8 47 91.5
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 7.9e-16 87.8 48 89.6
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 7.9e-16 87.8 48 89.6
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 7.9e-16 87.8 48 89.6
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 7.9e-16 87.8 48 89.6
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 7.9e-16 87.8 48 89.6
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 7.9e-16 87.8 48 89.6
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 7.9e-16 87.8 48 89.6
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 7.9e-16 87.8 47 91.5
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.0e-15 87.4 48 89.6
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 1.0e-15 87.4 48 89.6
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 1.0e-15 87.4 48 89.6
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.0e-15 87.4 48 89.6
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.0e-15 87.4 47 91.5
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 1.3e-15 87.0 48 89.6
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.3e-15 87.0 48 89.6
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.3e-15 87.0 48 89.6
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 1.3e-15 87.0 48 89.6
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.3e-15 87.0 48 89.6
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.3e-15 87.0 48 91.7
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 1.8e-15 86.7 47 89.4
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 1.8e-15 86.7 48 87.5
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 1.8e-15 86.7 48 87.5
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.8e-15 86.7 47 89.4
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.8e-15 86.7 47 89.4
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.3e-15 86.3 47 89.4
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 2.3e-15 86.3 47 89.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 2.3e-15 86.3 48 87.5
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 2.3e-15 86.3 48 89.6
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.3e-15 86.3 48 87.5
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 3.0e-15 85.9 48 89.6
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 3.0e-15 85.9 47 89.4
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.0e-15 85.9 48 87.5
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.9e-15 85.5 48 89.6
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 3.9e-15 85.5 47 89.4
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 5.1e-15 85.1 48 87.5
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 5.1e-15 85.1 48 89.6
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 5.1e-15 85.1 48 87.5
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 5.1e-15 85.1 48 85.4
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 6.7e-15 84.7 47 89.4
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 6.7e-15 84.7 48 85.4
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 6.7e-15 84.7 48 85.4
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 6.7e-15 84.7 47 85.1
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 6.7e-15 84.7 48 85.4
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 8.7e-15 84.3 48 87.5
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.1e-14 84.0 47 87.2
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.1e-14 84.0 48 83.3
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.1e-14 84.0 47 85.1
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.1e-14 84.0 48 85.4
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.5e-14 83.6 47 85.1
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 1.5e-14 83.6 48 85.4
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 1.5e-14 83.6 47 83.0
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.9e-14 83.2 48 83.3
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.9e-14 83.2 47 87.2
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 1.9e-14 83.2 48 85.4
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.9e-14 83.2 48 83.3
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 2.5e-14 82.8 47 85.1
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 2.5e-14 82.8 47 83.0
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 2.5e-14 82.8 48 83.3
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 2.5e-14 82.8 48 83.3
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 2.5e-14 82.8 48 83.3
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 3.3e-14 82.4 48 85.4
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.3e-14 82.4 48 85.4
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 4.3e-14 82.0 48 87.5
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 5.7e-14 81.6 47 83.0
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 5.7e-14 81.6 47 83.0
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.7e-14 81.6 47 83.0
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.7e-14 81.6 47 83.0
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.7e-14 81.6 47 83.0
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.7e-14 81.6 47 83.0
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.7e-14 81.6 47 83.0
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 7.4e-14 81.3 47 83.0
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 7.4e-14 81.3 47 85.1
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 7.4e-14 81.3 48 81.2
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 9.7e-14 80.9 48 83.3
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 9.7e-14 80.9 48 81.2
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.3e-13 80.5 51 80.4
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.3e-13 80.5 47 80.9
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.3e-13 80.5 48 83.3
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.6e-13 80.1 48 83.3
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 2.2e-13 79.7 48 83.3
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 3.7e-13 79.0 48 81.2
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 3.7e-13 79.0 47 83.0
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 4.8e-13 78.6 47 80.9
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 4.8e-13 78.6 48 83.3
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 8.2e-13 77.8 47 78.7
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 8.2e-13 77.8 48 83.3
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 1.4e-12 77.0 47 83.0
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 1.4e-12 77.0 42 88.1
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 5.3e-12 75.1 47 76.6
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.2e-11 73.9 47 72.3
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.2e-11 73.9 43 83.7
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 7.7e-11 71.2 59 61.0
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.8e-10 68.9 38 89.5
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.8e-10 68.9 47 70.2
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 3.8e-10 68.9 47 66.0
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.5e-09 66.2 48 64.6
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 5.5e-09 65.1 47 63.8
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 6.1e-08 61.6 47 63.8
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.0e-07 60.8 47 61.7
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 7.4e-06 54.7 47 55.3


User provided reference genes

Program Settings