Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.9e-118 427.6 219 100.0
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 2.1e-86 322.8 272 67.3
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 1.7e-85 319.7 271 67.9
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.1e-84 317.0 181 91.2
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 1.1e-84 317.0 271 67.2
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 9.6e-76 287.3 280 62.5
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.6e-75 286.6 241 67.2
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.3e-74 281.6 259 61.0
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.4e-71 273.5 287 57.8
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 4.5e-65 251.9 275 56.7
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 5.5e-63 245.0 274 53.3
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 3.7e-59 232.3 263 50.2
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 3.7e-59 232.3 228 58.8
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 1.1e-58 230.7 278 51.4
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 5.3e-58 228.4 277 49.5
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 9.0e-58 227.6 271 51.7
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 2.2e-56 223.0 219 56.6
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 2.9e-56 222.6 264 49.2
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.4e-55 220.3 264 48.9
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 1.4e-55 220.3 268 50.0
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 1.4e-55 220.3 276 50.4
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 1.9e-55 219.9 226 54.9
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 5.5e-55 218.4 268 48.5
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 1.6e-54 216.9 268 48.1
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.6e-54 216.9 243 53.5
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 3.6e-54 215.7 229 51.1
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 3.6e-54 215.7 261 47.1
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 3.6e-54 215.7 260 50.4
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 6.1e-54 214.9 275 47.6
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.1e-54 214.9 274 48.5
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.0e-53 214.2 264 48.5
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 1.0e-53 214.2 274 45.6
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 1.0e-53 214.2 218 53.7
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 1.0e-53 214.2 263 50.2
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.3e-53 213.8 272 48.2
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 1.8e-53 213.4 220 55.9
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 1.8e-53 213.4 281 48.0
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 1.8e-53 213.4 272 48.2
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 1.8e-53 213.4 226 54.0
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.3e-53 213.0 225 53.8
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.3e-53 213.0 234 53.0
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 3.0e-53 212.6 254 49.2
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 3.9e-53 212.2 219 54.3
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 6.7e-53 211.5 255 52.2
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 8.7e-53 211.1 221 50.7
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 8.7e-53 211.1 236 52.1
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.1e-52 210.7 256 46.9
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 1.1e-52 210.7 225 50.2
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.1e-52 210.7 270 47.8
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 1.1e-52 210.7 264 45.1
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 1.5e-52 210.3 227 54.2
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 1.5e-52 210.3 231 50.6
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.9e-52 209.9 255 49.4
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.9e-52 209.9 224 53.6
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 2.5e-52 209.5 223 50.2
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 2.5e-52 209.5 235 52.3
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 3.3e-52 209.1 275 47.6
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 5.7e-52 208.4 259 49.8
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 5.7e-52 208.4 284 46.1
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 7.4e-52 208.0 256 49.2
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 7.4e-52 208.0 270 46.7
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 9.7e-52 207.6 276 47.1
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 9.7e-52 207.6 299 43.8
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 2.2e-51 206.5 279 47.0
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 2.8e-51 206.1 248 49.6
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 2.8e-51 206.1 266 49.2
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 3.7e-51 205.7 240 52.5
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 6.3e-51 204.9 227 52.9
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 6.3e-51 204.9 231 48.9
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 8.2e-51 204.5 269 45.4
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 8.2e-51 204.5 233 50.6
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 8.2e-51 204.5 319 42.6
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 1.1e-50 204.1 277 45.8
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 1.1e-50 204.1 235 50.6
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 6.9e-50 201.4 228 51.8
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 9.1e-50 201.1 270 45.2
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 4.5e-49 198.7 222 51.4
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 4.5e-49 198.7 237 49.8
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.9e-49 198.4 237 49.4
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 7.7e-49 198.0 222 51.8
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.0e-48 197.6 245 48.6
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.0e-48 197.6 237 47.3
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 1.3e-48 197.2 222 51.4
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 1.7e-48 196.8 216 53.7
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.2e-48 196.4 237 49.4
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 2.2e-48 196.4 221 50.7
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 3.8e-48 195.7 223 51.6
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 3.8e-48 195.7 242 48.3
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 5.0e-48 195.3 233 49.4
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 6.5e-48 194.9 233 48.9
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 1.1e-47 194.1 275 45.1
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 5.5e-47 191.8 230 47.4
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 5.5e-47 191.8 229 49.3
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.2e-46 190.7 225 50.7
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 6.1e-46 188.3 219 51.6
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 7.9e-46 188.0 276 42.8
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 3.0e-45 186.0 228 46.9
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.5e-44 183.7 236 47.5
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 2.0e-44 183.3 260 43.1
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 2.6e-44 183.0 226 47.8
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 7.4e-44 181.4 249 45.0
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 1.3e-43 180.6 251 43.8
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 3.7e-43 179.1 217 49.3
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 3.7e-43 179.1 221 48.0
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 6.3e-43 178.3 261 42.5
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.4e-42 177.2 229 47.2
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 4.1e-42 175.6 276 41.3
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 5.3e-42 175.3 229 45.4
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 1.2e-41 174.1 243 45.3
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.5e-41 173.7 225 45.3
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.4e-41 172.6 290 39.7
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 7.7e-41 171.4 147 61.2
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 1.0e-40 171.0 216 45.8
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.7e-40 170.2 292 38.7
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.7e-40 170.2 154 57.1
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.2e-40 169.9 229 44.5
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 5.5e-39 165.2 196 49.5
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.2e-38 164.1 195 48.2
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 6.1e-38 161.8 234 44.0
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 5.2e-37 158.7 157 56.1
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 2.0e-36 156.8 236 42.8
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.6e-36 156.4 149 57.0
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 4.4e-36 155.6 263 42.6
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.7e-35 152.5 198 46.5
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.1e-34 151.0 232 40.9
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.6e-33 146.4 299 35.1
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 2.9e-32 142.9 146 55.5
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.8e-32 142.5 144 55.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 5.0e-32 142.1 224 40.6
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 8.5e-32 141.4 240 41.2
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.1e-31 141.0 140 52.1
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 7.2e-31 138.3 233 38.6
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 2.1e-30 136.7 156 48.7
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 4.7e-30 135.6 147 54.4
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 2.6e-28 129.8 146 50.7
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 3.3e-28 129.4 143 46.9
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.3e-27 127.5 149 45.6
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 4.1e-26 122.5 125 53.6
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.9e-25 118.6 161 45.3
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.8e-19 99.0 145 41.4
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 2.9e-16 89.7 86 51.2
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 6.5e-16 88.6 95 54.7
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 8.5e-16 88.2 158 32.9
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 3.6e-14 82.8 68 60.3
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.0e-13 79.3 83 47.0
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.4e-10 70.9 95 47.4
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 2.8e-06 56.6 203 26.6


User provided reference genes

Program Settings