Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.2e-141 506.5 261 100.0
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 5.1e-116 421.4 231 93.5
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.3e-111 406.8 233 90.6
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.6e-109 399.8 234 90.2
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 1.6e-98 363.2 243 78.6
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 1.9e-91 339.7 209 84.2
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 2.8e-90 335.9 234 78.2
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 8.2e-74 281.2 243 56.8
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.1e-73 280.8 232 59.1
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.4e-73 279.6 235 56.2
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 9.1e-73 277.7 234 58.5
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.0e-72 276.6 233 57.9
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 2.6e-72 276.2 233 60.9
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 2.6e-72 276.2 237 59.5
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 2.6e-72 276.2 237 59.5
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 7.7e-72 274.6 233 56.7
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 1.7e-71 273.5 237 57.0
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.1e-70 270.8 237 57.4
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.1e-70 270.8 239 57.3
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.4e-70 270.4 230 55.2
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 7.2e-70 268.1 230 54.8
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 9.4e-70 267.7 237 57.8
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 2.7e-69 266.2 245 56.7
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 6.1e-69 265.0 237 56.5
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.0e-68 264.2 226 57.5
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 1.8e-68 263.5 237 56.5
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 3.9e-68 262.3 238 55.0
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 5.1e-68 261.9 236 55.1
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 5.1e-68 261.9 234 53.4
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 2.0e-67 260.0 241 54.4
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 4.4e-67 258.8 235 54.0
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 5.7e-67 258.5 237 57.0
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 5.7e-67 258.5 237 54.9
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 9.7e-67 257.7 236 53.0
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 9.7e-67 257.7 237 54.0
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.7e-66 256.9 256 50.0
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.8e-66 256.1 237 55.7
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 4.8e-66 255.4 244 52.0
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 6.3e-66 255.0 255 53.3
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 8.2e-66 254.6 235 51.5
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.8e-65 253.4 233 52.4
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.8e-65 253.4 232 53.4
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.4e-65 253.1 234 57.3
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.4e-65 253.1 237 55.3
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.6e-64 250.4 239 52.3
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 2.0e-64 250.0 237 54.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 2.6e-64 249.6 233 54.9
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 3.5e-64 249.2 233 53.2
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.5e-64 248.8 237 54.4
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 5.9e-64 248.4 241 53.9
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.9e-64 248.4 237 52.7
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 7.7e-64 248.1 236 54.2
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 2.2e-63 246.5 236 53.0
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.9e-63 246.1 238 54.6
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 6.5e-63 245.0 237 53.2
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.5e-62 243.8 234 51.3
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.5e-62 243.8 235 51.9
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.5e-62 243.8 236 50.8
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.5e-62 243.8 236 52.5
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.5e-62 243.8 236 53.8
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.5e-62 243.8 235 52.8
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.9e-62 243.4 226 53.5
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 2.5e-62 243.0 235 52.3
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.2e-62 242.7 238 54.2
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 3.2e-62 242.7 241 51.5
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 4.2e-62 242.3 228 50.9
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 5.5e-62 241.9 237 51.5
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 9.4e-62 241.1 233 51.9
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.2e-61 240.7 236 52.5
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.1e-61 240.0 226 53.1
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 2.7e-61 239.6 233 52.4
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 6.1e-61 238.4 235 51.1
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 2.3e-60 236.5 236 50.0
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.3e-60 236.5 235 50.6
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 3.0e-60 236.1 236 48.3
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 6.7e-60 235.0 238 52.5
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 8.8e-60 234.6 237 49.4
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.1e-59 234.2 238 50.4
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.5e-59 233.8 226 51.8
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 2.6e-59 233.0 237 49.4
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 2.6e-59 233.0 239 49.4
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 2.6e-59 233.0 226 50.4
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 3.3e-59 232.6 208 56.7
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 5.7e-59 231.9 251 46.2
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 7.5e-59 231.5 225 50.2
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.7e-58 230.3 233 49.4
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.7e-58 230.3 233 49.4
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 2.2e-58 229.9 238 47.5
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 2.8e-58 229.6 236 47.0
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.4e-57 227.3 241 48.5
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.4e-57 227.3 242 51.2
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 5.3e-57 225.3 236 48.7
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.6e-56 223.8 236 48.7
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.6e-56 223.8 236 48.7
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 2.0e-56 223.4 238 47.5
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 2.0e-56 223.4 207 54.6
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 4.5e-56 222.2 238 46.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 4.5e-56 222.2 238 47.1
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 7.7e-56 221.5 231 47.6
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 7.7e-56 221.5 208 54.8
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.3e-55 220.7 242 45.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.9e-55 219.5 241 45.6
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.9e-55 219.5 214 52.8
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 3.8e-55 219.2 238 46.6
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.8e-55 219.2 217 52.1
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 5.0e-55 218.8 189 58.7
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 5.0e-55 218.8 235 46.4
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.5e-54 217.2 232 47.4
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.9e-54 216.9 237 48.9
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 2.5e-54 216.5 236 44.9
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 5.5e-54 215.3 213 51.6
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 8.0e-53 211.5 232 48.3
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.0e-52 211.1 205 52.2
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.8e-52 210.3 244 45.5
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 2.3e-52 209.9 233 45.5
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 5.7e-51 205.3 235 43.8
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.7e-50 203.8 240 45.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.8e-50 203.0 185 56.8
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.8e-50 203.0 185 56.8
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 3.7e-50 202.6 256 44.9
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.5e-48 195.7 206 51.0
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.5e-48 195.7 206 51.0
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.8e-47 192.6 237 42.6
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.5e-46 190.7 240 44.2
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 3.6e-45 186.0 180 54.4
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.3e-44 183.3 233 42.1
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 8.8e-44 181.4 164 55.5
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.4e-43 179.5 203 46.8
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 9.8e-43 177.9 208 46.2
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.7e-42 177.2 216 45.8
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 6.3e-42 175.3 198 47.5
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.1e-41 174.5 232 43.1
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.8e-41 173.7 216 44.9
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.5e-38 163.3 207 44.9
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 5.2e-36 155.6 161 50.9
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.4e-33 147.5 242 35.5
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 7.8e-32 141.7 168 48.2
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 4.3e-30 136.0 97 64.9
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 8.9e-28 128.3 103 58.3
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 2.0e-27 127.1 144 51.4
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 6.4e-26 122.1 234 35.5
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 4.6e-24 115.9 82 65.9
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 3.0e-23 113.2 142 43.0
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.9e-22 110.5 81 65.4
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 2.0e-19 100.5 85 58.8
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 7.5e-19 98.6 73 54.8
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.3e-18 97.8 86 51.2
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.1e-17 94.7 132 40.9
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.1e-17 94.7 247 27.1
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 2.4e-17 93.6 124 39.5
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.5e-11 74.3 50 68.0


User provided reference genes

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