Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 0.0e+00 1418.3 731 100.0
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 0.0e+00 1243.4 713 91.4
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 2.1e-300 1035.4 717 78.5
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 4.3e-298 1027.7 717 78.2
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 5.9e-295 1017.3 717 77.5
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 2.4e-288 995.3 711 75.9
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 1.8e-195 686.8 733 57.0
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 6.3e-188 661.8 730 54.9
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 1.1e-181 641.0 735 53.6
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 9.0e-179 631.3 740 53.0
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 1.2e-175 620.9 740 52.3
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 8.5e-153 545.0 733 47.9
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 2.9e-145 520.0 732 47.3
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 8.8e-142 508.4 714 45.9
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 1.3e-129 468.0 737 43.0
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 5.6e-128 462.6 748 43.3
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.6e-127 461.1 758 43.0
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 2.8e-127 460.3 726 43.3
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 8.9e-126 455.3 792 41.5
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.1e-123 448.4 748 41.7
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 3.5e-122 443.4 745 42.3
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.9e-120 437.6 743 42.7
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 2.1e-119 434.1 747 41.1
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 4.7e-119 433.0 722 41.8
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 3.4e-117 426.8 730 41.8
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 1.3e-116 424.9 709 41.5
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 3.2e-115 420.2 743 42.1
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 7.3e-112 409.1 763 39.7
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 1.6e-111 407.9 744 40.2
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 2.0e-109 401.0 728 40.0
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 1.1e-104 385.2 741 39.3
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 1.1e-102 378.6 725 38.2
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 1.4e-102 378.3 738 39.0
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.8e-102 377.9 746 38.9
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 1.7e-100 371.3 740 39.3
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 4.9e-100 369.8 723 38.0
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 8.4e-100 369.0 872 33.9
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.3e-97 361.7 737 39.3
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 1.5e-96 358.2 750 37.1
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 2.1e-95 354.4 754 37.9
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 4.0e-94 350.1 738 38.2
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 1.5e-93 348.2 757 37.5
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 2.9e-92 344.0 729 38.0
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 8.4e-92 342.4 762 36.4
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 2.4e-91 340.9 714 37.7
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 9.3e-91 339.0 743 36.6
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 2.1e-90 337.8 743 37.0
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 4.6e-90 336.7 907 33.1
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 7.9e-90 335.9 744 36.3
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 3.0e-89 334.0 770 36.0
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 5.1e-89 333.2 743 35.9
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 5.1e-89 333.2 709 36.4
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.5e-88 331.6 704 37.2
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 2.1e-87 327.8 707 37.8
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 6.2e-87 326.2 757 36.5
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 8.1e-87 325.9 761 36.1
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 3.1e-86 323.9 805 35.5
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 9.0e-86 322.4 749 36.0
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 2.0e-85 321.2 742 36.8
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.6e-85 320.9 754 35.5
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 1.7e-84 318.2 747 36.0
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.8e-84 317.0 743 37.3
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.3e-81 308.5 745 36.4
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.0e-81 307.4 747 36.0
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.3e-80 303.9 740 36.1
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 7.4e-80 302.8 730 35.1
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 6.2e-79 299.7 765 35.9
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 3.1e-78 297.4 762 35.6
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 6.9e-78 296.2 739 35.5
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 5.8e-77 293.1 762 35.2
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 7.1e-75 286.2 747 32.7
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 2.7e-74 284.3 682 35.8
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 2.3e-73 281.2 683 35.4
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 3.7e-71 273.9 748 32.4
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 6.3e-71 273.1 721 34.1
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 3.1e-70 270.8 726 33.3
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 6.9e-70 269.6 727 33.3
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 1.3e-68 265.4 709 33.9
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 3.8e-68 263.8 706 33.0
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 2.1e-66 258.1 711 33.8
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.3e-65 255.4 703 33.3
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 1.3e-65 255.4 734 32.4
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 6.7e-65 253.1 703 31.2
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 7.4e-64 249.6 752 32.2
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 6.9e-62 243.0 723 31.8
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 4.5e-61 240.4 765 30.8
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 1.1e-59 235.7 713 32.4
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.4e-59 235.3 716 31.4
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 2.5e-59 234.6 794 30.4
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 2.1e-58 231.5 654 32.1
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.4e-57 228.8 724 29.6
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 5.1e-57 226.9 679 32.4
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 8.8e-57 226.1 771 30.9
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.0e-56 224.9 699 32.5
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.7e-55 221.9 764 31.5
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 3.7e-55 220.7 689 31.2
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 2.4e-54 218.0 673 31.4
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 9.1e-54 216.1 680 31.2
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 5.0e-52 210.3 301 45.2
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 2.1e-50 204.9 651 32.0
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 2.7e-50 204.5 767 29.9
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 2.3e-49 201.4 731 31.7
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 7.4e-48 196.4 558 33.7
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 8.2e-47 193.0 710 31.1
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 1.8e-46 191.8 721 30.4
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 7.0e-46 189.9 755 29.0
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 2.6e-45 188.0 760 30.1
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 4.5e-45 187.2 749 29.8
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 5.0e-44 183.7 753 29.5
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 5.5e-43 180.3 760 29.3
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 2.1e-42 178.3 162 58.0
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 4.0e-41 174.1 729 30.2
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 5.2e-41 173.7 757 28.5
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 6.7e-41 173.3 671 30.1
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 7.5e-40 169.9 129 65.1
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 2.0e-37 161.8 763 27.5
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 1.0e-36 159.5 765 26.9
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 7.2e-35 153.3 736 29.2
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 6.1e-34 150.2 751 28.1
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 3.0e-33 147.9 751 28.2
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 5.2e-33 147.1 737 28.6
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 9.8e-32 142.9 742 29.0
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 1.7e-31 142.1 761 26.8
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 1.7e-31 142.1 761 26.8
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 4.1e-30 137.5 776 27.3
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 1.2e-26 125.9 763 26.3
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 1.2e-26 125.9 763 26.3
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.8e-26 124.8 752 25.9
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 1.4e-25 122.5 833 27.4
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 6.8e-17 93.6 94 53.2
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 1.0e-12 79.7 691 23.6
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 1.2e-08 66.2 748 22.9
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 1.5e-08 65.9 112 38.4
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 4.4e-08 64.3 168 32.1
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 9.8e-08 63.2 420 26.9
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 1.3e-07 62.8 47 66.0
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 3.7e-07 61.2 96 39.6
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 4.1e-06 57.8 766 20.5


User provided reference genes

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