Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 0.0e+00 1958.3 975 100.0
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 0.0e+00 1744.2 1008 88.4
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 0.0e+00 1601.6 981 82.0
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 0.0e+00 1600.9 982 82.5
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 0.0e+00 1496.1 977 77.1
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 0.0e+00 1419.4 983 75.6
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1152.5 982 59.6
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.5e-309 1066.2 972 56.3
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 4.1e-304 1048.1 972 55.8
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 1.3e-302 1043.1 981 54.5
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 8.1e-292 1007.3 984 53.2
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 8.1e-292 1007.3 982 53.0
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.4e-291 1006.5 587 84.7
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 1.1e-288 996.9 993 51.2
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 1.7e-286 989.6 984 51.8
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 2.4e-283 979.2 965 53.7
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 2.6e-282 975.7 983 52.3
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 1.2e-279 966.8 980 50.8
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 1.7e-278 963.0 977 50.4
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 3.9e-278 961.8 985 51.4
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 4.0e-275 951.8 982 50.0
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 3.4e-274 948.7 971 51.7
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 3.8e-273 945.3 978 50.1
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 6.7e-270 934.5 979 50.4
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 6.0e-263 911.4 980 49.0
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 3.3e-261 905.6 980 48.7
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 1.3e-260 903.7 980 48.6
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.6e-260 903.3 980 49.1
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 1.8e-251 873.2 984 47.2
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 7.2e-248 861.3 981 47.6
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 9.4e-248 860.9 979 47.4
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 2.3e-246 856.3 980 46.7
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.1e-245 854.0 984 45.8
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 3.7e-244 849.0 983 47.0
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 9.1e-243 844.3 977 44.8
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 1.0e-241 840.9 979 46.7
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 3.8e-241 839.0 852 49.9
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 1.1e-240 837.4 976 45.7
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 5.5e-240 835.1 967 47.3
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 2.7e-239 832.8 981 46.0
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 2.0e-237 826.6 1097 43.0
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 2.4e-235 819.7 984 44.3
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 7.0e-235 818.1 980 44.7
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 1.6e-234 817.0 983 42.6
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.7e-233 813.5 984 44.8
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 2.2e-233 813.1 995 46.2
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 4.2e-232 808.9 977 44.0
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 2.1e-231 806.6 982 44.6
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 4.7e-231 805.4 986 43.8
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 8.0e-231 804.7 981 44.6
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.4e-230 803.9 980 44.5
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.2e-229 800.8 983 43.8
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 5.7e-229 798.5 981 44.5
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.2e-228 796.6 941 45.6
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 3.1e-227 792.7 972 45.0
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 3.1e-227 792.7 981 44.6
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 4.1e-227 792.3 977 44.8
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 5.3e-227 792.0 995 44.3
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 5.0e-225 785.4 977 44.1
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 2.7e-223 779.6 981 42.5
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 6.1e-223 778.5 981 41.8
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.2e-221 774.2 981 41.5
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 2.0e-221 773.5 983 41.5
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 7.0e-219 765.0 900 46.4
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 5.9e-218 761.9 933 44.3
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 1.7e-217 760.4 980 41.4
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 1.9e-216 756.9 762 51.0
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 9.5e-216 754.6 980 41.0
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 6.1e-215 751.9 980 41.0
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 9.8e-205 718.0 942 42.8
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 6.2e-199 698.7 978 40.0
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 2.3e-198 696.8 998 43.0
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 1.6e-194 684.1 851 42.8
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 1.1e-192 677.9 872 42.1
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.2e-191 674.5 754 46.2
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.0e-189 667.2 971 40.3
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.7e-188 664.1 793 45.0
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.6e-186 657.5 772 46.2
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 9.5e-184 648.3 764 46.3
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 1.8e-182 644.0 971 37.4
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 6.8e-182 642.1 386 85.5
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 6.6e-177 625.5 971 36.9
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 3.1e-166 590.1 975 36.7
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 1.2e-165 588.2 995 36.0
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 1.3e-164 584.7 792 41.9
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 8.4e-164 582.0 731 42.7
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 8.4e-164 582.0 722 42.2
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.9e-148 529.6 581 48.2
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 8.4e-148 528.9 751 41.5
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 9.7e-128 462.2 748 37.4
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 6.3e-119 433.0 846 33.1
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 5.3e-118 429.9 449 54.3
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.1e-115 422.2 434 48.6
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 9.1e-102 375.9 235 80.9
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 5.0e-100 370.2 247 77.3
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 1.9e-91 341.7 936 29.3
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 4.4e-80 303.9 359 47.6
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 1.7e-79 302.0 1010 26.7
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 2.4e-78 298.1 1027 25.1
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.8e-74 284.6 435 41.6
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 3.2e-62 244.6 206 52.9
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.6e-61 242.3 323 36.8
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 7.8e-61 240.0 482 35.1
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 3.9e-60 237.7 200 53.5
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 5.8e-48 197.2 390 32.3
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 3.8e-47 194.5 143 63.6
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 7.9e-45 186.8 173 50.9
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.5e-40 172.6 190 48.4
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 2.0e-40 172.2 140 55.0
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 5.8e-40 170.6 145 51.7
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 7.4e-35 153.7 185 43.8
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.8e-33 149.1 200 39.5
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 9.0e-33 146.7 146 49.3
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 9.3e-30 136.7 255 31.0
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 8.7e-28 130.2 148 45.3
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 1.9e-27 129.0 148 44.6
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 2.6e-24 118.6 125 45.6
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 7.7e-24 117.1 92 56.5
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 3.6e-21 108.2 155 37.4
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 2.2e-18 99.0 121 46.3
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.7e-15 89.4 155 36.1
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 1.6e-13 82.8 91 40.7
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 3.3e-11 75.1 155 30.3
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 1.4e-09 69.7 126 33.3


User provided reference genes

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