Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000607g0050 Nicotiana tabacum HOM05D000094 ORTHO05D283379 2.2e-64 248.8 126 100.0
Nitab4.5_0000642g0050 Nicotiana tabacum HOM05D000094 ORTHO05D002063 8.4e-16 87.4 209 35.4
CARHR276500 Cardamine hirsuta HOM05D000094 ORTHO05D002063 1.1e-15 87.0 158 37.3
Nitab4.5_0004048g0030 Nicotiana tabacum HOM05D000094 ORTHO05D002063 1.9e-15 86.3 209 35.4
Peaxi162Scf00009g00433 Petunia axillaris HOM05D000094 ORTHO05D002063 1.9e-15 86.3 210 34.8
ClCG01G014360 Citrullus lanatus HOM05D000094 ORTHO05D002063 2.4e-15 85.9 119 45.4
SalBow1G6213 Salvia bowleyana HOM05D000094 ORTHO05D002063 1.2e-14 83.6 126 43.7
SalBow5G5512 Salvia bowleyana HOM05D000094 ORTHO05D002063 1.2e-14 83.6 126 43.7
CAN.G999.23 Capsicum annuum HOM05D000094 ORTHO05D002063 4.6e-14 81.6 209 34.0
COL.COLO4_09206 Corchorus olitorius HOM05D000094 ORTHO05D002063 7.9e-14 80.9 118 44.9
Solyc03g113450.4 Solanum lycopersicum HOM05D000094 ORTHO05D002063 5.1e-13 78.2 209 33.0
PGSC0003DMG400025330 Solanum tuberosum HOM05D000094 ORTHO05D002063 6.6e-13 77.8 209 32.5
Lj5A116T63 Lonicera japonica HOM05D000094 ORTHO05D002063 8.7e-13 77.4 42 81.0
Manes.06G096900 Manihot esculenta HOM05D000094 ORTHO05D002063 8.7e-13 77.4 42 81.0
THA.LOC104821455 Tarenaya hassleriana HOM05D000094 ORTHO05D002063 1.1e-12 77.0 42 78.6
QL10p015145 Quercus lobata HOM05D000094 ORTHO05D002063 1.5e-12 76.6 42 78.6
Thecc.03G078300 Theobroma cacao HOM05D000094 ORTHO05D002063 1.5e-12 76.6 42 78.6
Ciclev10019379m.g Citrus clementina HOM05D000094 ORTHO05D002063 1.9e-12 76.3 42 78.6
Rhsim08G0160400 Rhododendron simsii HOM05D000168 ORTHO05D002063 1.9e-12 76.3 184 33.2
Sopen03g032500 Solanum pennellii HOM05D000094 ORTHO05D002063 2.5e-12 75.9 209 32.5
Atru.chr9.2329 Acer truncatum HOM05D000094 ORTHO05D002063 3.3e-12 75.5 42 78.6
Prupe.5G185500 Prunus persica HOM05D000094 ORTHO05D002063 3.3e-12 75.5 42 81.0
CSS0042073 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D002063 4.3e-12 75.1 42 73.8
Cc04_g15670 Coffea canephora HOM05D000094 ORTHO05D002063 4.3e-12 75.1 42 78.6
DCAR_016532 Daucus carota HOM05D000094 ORTHO05D002063 7.4e-12 74.3 42 78.6
Glyma.05G030100 Glycine max HOM05D000094 ORTHO05D002063 1.3e-11 73.6 42 76.2
Manes.14G074200 Manihot esculenta HOM05D000094 ORTHO05D002063 1.3e-11 73.6 42 76.2
Oeu048730.1 Olea europaea HOM05D000094 ORTHO05D002063 1.3e-11 73.6 42 76.2
Ca_21852_v3 Cicer arietinum L. HOM05D000094 ORTHO05D002063 1.6e-11 73.2 42 73.8
Eucgr.B00412 Eucalyptus grandis HOM05D000094 ORTHO05D002063 1.6e-11 73.2 42 76.2
FvH4_5g15570 Fragaria vesca HOM05D000094 ORTHO05D002063 2.8e-11 72.4 42 78.6
FAN18G2913 Fragaria x ananassa HOM05D000094 ORTHO05D002063 2.8e-11 72.4 42 78.6
Glyma.17G096500 Glycine max HOM05D000094 ORTHO05D002063 2.8e-11 72.4 42 73.8
GSVIVG01008070001 Vitis vinifera HOM05D000094 ORTHO05D002063 2.8e-11 72.4 42 73.8
MSTRG.23050 Avicennia marina HOM05D000094 ORTHO05D002063 3.6e-11 72.0 42 73.8
Duzib068G0258 Durio zibethinus HOM05D000094 ORTHO05D002063 3.6e-11 72.0 42 73.8
PGR083G0396 Punica granatum HOM05D000094 ORTHO05D002063 4.8e-11 71.6 42 73.8
PGR083G1599 Punica granatum HOM05D000094 ORTHO05D002063 4.8e-11 71.6 42 73.8
AL8G39680 Arabidopsis lyrata HOM05D000094 ORTHO05D002063 6.2e-11 71.2 49 65.3
FAN08G0384 Fragaria x ananassa HOM05D000094 ORTHO05D002063 6.2e-11 71.2 42 76.2
Actinidia37660 Actinidia chinensis HOM05D000094 ORTHO05D002063 8.1e-11 70.9 41 73.2
Hma1.2p1_0002F.1_g003290 Hydrangea macrophylla HOM05D000094 ORTHO05D002063 8.1e-11 70.9 42 71.4
Psat4g051680 Pisum sativum HOM05D000094 ORTHO05D002063 8.1e-11 70.9 42 71.4
RcHm_v2.0_Chr7g0180531 Rosa chinensis HOM05D000094 ORTHO05D002063 8.1e-11 70.9 42 73.8
DCAR_026079 Daucus carota HOM05D000094 ORTHO05D002063 1.1e-10 70.5 42 73.8
MD14G1193700 Malus domestica HOM05D000094 ORTHO05D002063 1.1e-10 70.5 42 73.8
Glyma.04G174700 Glycine max HOM05D000094 ORTHO05D002063 1.4e-10 70.1 42 69.0
Potri.012G071100 Populus trichocarpa HOM05D000094 ORTHO05D002063 1.4e-10 70.1 42 71.4
TWI60G0650 Tripterygium wilfordii HOM05D000094 ORTHO05D002063 1.4e-10 70.1 42 71.4
FAN13G1840 Fragaria x ananassa HOM05D000094 ORTHO05D002063 1.8e-10 69.7 42 73.8
Gohir.A07G065600 Gossypium hirsutum HOM05D000094 ORTHO05D002063 1.8e-10 69.7 42 76.2
Gohir.D07G070100 Gossypium hirsutum HOM05D000094 ORTHO05D002063 1.8e-10 69.7 42 76.2
Gorai.001G074000 Gossypium raimondii HOM05D000094 ORTHO05D002063 1.8e-10 69.7 42 76.2
Nn4g23027 Nelumbo nucifera HOM05D000094 ORTHO05D002063 1.8e-10 69.7 42 69.0
Migut.I00125 Erythranthe guttata HOM05D000094 ORTHO05D002063 2.4e-10 69.3 43 74.4
Gohir.D11G032400 Gossypium hirsutum HOM05D000094 ORTHO05D002063 2.4e-10 69.3 42 71.4
Gorai.007G035200 Gossypium raimondii HOM05D000094 ORTHO05D002063 2.4e-10 69.3 42 71.4
HanXRQChr16g0503261 Helianthus annuus HOM05D000094 ORTHO05D002063 2.4e-10 69.3 49 65.3
MD06G1187300 Malus domestica HOM05D000094 ORTHO05D002063 2.4e-10 69.3 42 71.4
Nn3g17116 Nelumbo nucifera HOM05D000094 ORTHO05D002063 2.4e-10 69.3 42 66.7
SGA_v2.0_scaffold56G20057 Striga asiatica HOM05D000094 ORTHO05D002063 2.4e-10 69.3 42 66.7
TAR622G1061 Trochodendron aralioides HOM05D000094 ORTHO05D002063 2.4e-10 69.3 42 69.0
Cfa018997 Carpinus fangiana HOM05D000094 ORTHO05D002063 3.1e-10 68.9 42 69.0
FAN04G2203 Fragaria x ananassa HOM05D000094 ORTHO05D002063 3.1e-10 68.9 42 73.8
PSO591G0284 Papaver somniferum HOM05D000094 ORTHO05D002063 3.1e-10 68.9 42 69.0
Carub.0008s2344 Capsella rubella HOM05D000094 ORTHO05D002063 4.0e-10 68.6 49 63.3
HanXRQChr09g0271151 Helianthus annuus HOM05D000094 ORTHO05D002063 4.0e-10 68.6 42 66.7
Lj4g0012183 Lotus japonicus HOM05D000094 ORTHO05D002063 4.0e-10 68.6 42 69.0
ECA232G0931 Erigeron canadensis HOM05D000094 ORTHO05D002063 5.3e-10 68.2 42 69.0
Gohir.A11G029081 Gossypium hirsutum HOM05D000094 ORTHO05D002063 5.3e-10 68.2 42 71.4
MBI01_g12857_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D002063 5.3e-10 68.2 42 66.7
Ah.11g048770 Amaranthus hybridus HOM05D000094 ORTHO05D002063 6.9e-10 67.8 42 71.4
TPR.G38402 Trifolium pratense HOM05D000094 ORTHO05D002063 6.9e-10 67.8 42 66.7
arahy.Tifrunner.gnm1.ann1.3I7H6G Arachis hypogaea HOM05D000094 ORTHO05D002063 9.0e-10 67.4 42 66.7
arahy.Tifrunner.gnm1.ann1.IPX7IG Arachis hypogaea HOM05D000094 ORTHO05D002063 9.0e-10 67.4 42 66.7
BcaNung01384 Brassica carinata HOM05D000094 ORTHO05D039608 9.0e-10 67.4 42 64.3
Medtr4g107620 Medicago truncatula HOM05D000094 ORTHO05D002063 9.0e-10 67.4 42 64.3
Hund02672 Selenicereus undatus HOM05D000094 ORTHO05D002063 9.0e-10 67.4 42 66.7
BcaC04g23396 Brassica carinata HOM05D000094 ORTHO05D002063 1.2e-09 67.0 42 64.3
C09p08800 Brassica napus HOM05D000094 ORTHO05D002063 1.2e-09 67.0 42 64.3
CAN.G999.21 Capsicum annuum HOM05D000094 ORTHO05D002063 1.2e-09 67.0 41 78.0
AUR62008351 Chenopodium quinoa HOM05D000094 ORTHO05D002063 1.2e-09 67.0 42 69.0
AUR62021746 Chenopodium quinoa HOM05D000094 ORTHO05D002063 1.2e-09 67.0 42 69.0
Duzib205G1105 Durio zibethinus HOM05D000094 ORTHO05D002063 1.2e-09 67.0 42 71.4
Thhalv10003855m.g Eutrema salsugineum HOM05D000094 ORTHO05D002063 1.2e-09 67.0 42 64.3
Oeu024866.1 Olea europaea HOM05D000094 ORTHO05D002063 1.2e-09 67.0 42 69.0
Hund09370 Selenicereus undatus HOM05D000094 ORTHO05D002063 1.2e-09 67.0 42 69.0
EL10Ac5g10939 Beta vulgaris HOM05D000094 ORTHO05D002063 1.5e-09 66.6 42 69.0
BolC9t53793H Brassica oleracea HOM05D000094 ORTHO05D002063 1.5e-09 66.6 42 61.9
Glyma.06G190000 Glycine max HOM05D000094 ORTHO05D002063 1.5e-09 66.6 42 64.3
Phvul.003G193100 Phaseolus vulgaris HOM05D000094 ORTHO05D002063 1.5e-09 66.6 42 66.7
CiPaw.11G037300 Carya illinoinensis HOM05D000094 ORTHO05D002063 2.0e-09 66.2 42 64.3
PSO832G3576 Papaver somniferum HOM05D000094 ORTHO05D002063 2.0e-09 66.2 41 68.3
Sp2g25880 Schrenkiella parvula HOM05D000094 ORTHO05D002063 2.0e-09 66.2 42 61.9
TWI81G0342 Tripterygium wilfordii HOM05D000094 ORTHO05D002063 2.0e-09 66.2 42 66.7
BcaC01g02510 Brassica carinata HOM05D000094 ORTHO05D002063 2.6e-09 65.9 42 61.9
A06p29500 Brassica napus HOM05D000094 ORTHO05D002063 2.6e-09 65.9 42 61.9
A09p07820 Brassica napus HOM05D000094 ORTHO05D002063 2.6e-09 65.9 42 61.9
C03p64020 Brassica napus HOM05D000282 ORTHO05D002063 2.6e-09 65.9 42 61.9
BolC3t18657H Brassica oleracea HOM05D000094 ORTHO05D002063 2.6e-09 65.9 42 61.9
BraA06t25895Z Brassica rapa HOM05D000094 ORTHO05D002063 2.6e-09 65.9 42 61.9
BraA09t36433Z Brassica rapa HOM05D000094 ORTHO05D002063 2.6e-09 65.9 42 61.9
Cpa.g.sc688.1 Carica papaya HOM05D000094 ORTHO05D002063 2.6e-09 65.9 42 66.7
Sc04g0002370 Simmondsia chinensis HOM05D000094 ORTHO05D002063 2.6e-09 65.9 42 64.3
Sc04g0002390 Simmondsia chinensis HOM05D000094 ORTHO05D002063 2.6e-09 65.9 42 64.3
AT5G62710 Arabidopsis thaliana HOM05D000094 ORTHO05D002063 3.4e-09 65.5 46 65.2
MELO3C002211.2 Cucumis melo HOM05D000094 ORTHO05D002063 3.4e-09 65.5 48 62.5
Lalb_Chr13g0303441 Lupinus albus HOM05D000094 ORTHO05D002063 3.4e-09 65.5 42 61.9
PSO017G5106 Papaver somniferum HOM05D000094 ORTHO05D002063 3.4e-09 65.5 42 66.7
PSO478G3052 Papaver somniferum HOM05D000094 ORTHO05D002063 3.4e-09 65.5 42 66.7
Sed0012864 Sechium edule HOM05D000094 ORTHO05D002063 7.6e-09 64.3 42 69.0
arahy.Tifrunner.gnm1.ann1.3JW03P Arachis hypogaea HOM05D000094 ORTHO05D002063 9.9e-09 63.9 41 63.4
arahy.Tifrunner.gnm1.ann1.6754IK Arachis hypogaea HOM05D000094 ORTHO05D002063 9.9e-09 63.9 41 63.4
Aqoxy1G03042 Aquilegia oxysepala HOM05D000094 ORTHO05D002063 1.3e-08 63.5 49 61.2
Aqoxy3G03255 Aquilegia oxysepala HOM05D000094 ORTHO05D002063 1.3e-08 63.5 49 61.2
Aqoxy4G01842 Aquilegia oxysepala HOM05D000094 ORTHO05D002063 1.3e-08 63.5 49 61.2
Lalb_Chr12g0196681 Lupinus albus HOM05D000094 ORTHO05D002063 1.3e-08 63.5 42 59.5
Aa31LG11G970 Aethionema arabicum HOM05D000094 ORTHO05D002063 1.7e-08 63.2 42 59.5
BcaB02g09675 Brassica carinata HOM05D000094 ORTHO05D002063 1.7e-08 63.2 42 59.5
ClCG06G016400 Citrullus lanatus HOM05D000094 ORTHO05D002063 2.2e-08 62.8 42 64.3
MELO3C017153.2 Cucumis melo HOM05D000094 ORTHO05D002063 2.2e-08 62.8 42 64.3
CsaV3_1G002130 Cucumis sativus L. HOM05D000094 ORTHO05D002063 2.2e-08 62.8 42 64.3
Zm00001eb033050 Zea mays HOM05D000094 ORTHO05D002063 2.2e-08 62.8 42 64.3
Phvul.009G190400 Phaseolus vulgaris HOM05D000094 ORTHO05D002063 2.9e-08 62.4 42 59.5
ClCG07G011290 Citrullus lanatus HOM05D000094 ORTHO05D002063 6.4e-08 61.2 128 31.2
VMungo1309G2041 Vigna mungo HOM05D000094 ORTHO05D002063 6.4e-08 61.2 43 60.5
Sed0004741 Sechium edule HOM05D000094 ORTHO05D002063 8.4e-08 60.8 42 59.5
SGA_v2.0_scaffold25G10889 Striga asiatica HOM05D000094 ORTHO05D002063 1.1e-07 60.5 42 59.5
ATR0665G290 Amborella trichopoda HOM05D000094 ORTHO05D002063 1.9e-07 59.7 42 57.1
Os12g0638100 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D002063 1.9e-07 59.7 42 59.5
Sabra03G0072000 Salix brachista HOM05D000094 ORTHO05D002063 1.9e-07 59.7 128 31.2
vmacro19429 Vaccinium macrocarpon HOM05D000094 ORTHO05D002063 3.2e-07 58.9 50 56.0
Lj1g0018804 Lotus japonicus HOM05D000094 ORTHO05D002063 5.5e-07 58.2 42 57.1
COL.COLO4_16711 Corchorus olitorius HOM05D000094 ORTHO05D002063 7.1e-07 57.8 136 29.4
Rhsim07G0174500 Rhododendron simsii HOM05D000507 ORTHO05D002063 7.1e-07 57.8 129 30.2
VMungo1215G2180 Vigna mungo HOM05D000094 ORTHO05D002063 7.1e-07 57.8 42 54.8
MBI04_g30783_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D002063 9.3e-07 57.4 128 29.7
Sabra01G0099200 Salix brachista HOM05D003000 ORTHO05D003699 1.6e-06 56.6 128 29.7
Lsat_1_v5_gn_4_107361 Lactuca sativa HOM05D000094 ORTHO05D002063 2.7e-06 55.8 42 59.5
Sc04g0002420 Simmondsia chinensis HOM05D000094 ORTHO05D002063 7.9e-06 54.3 35 62.9


User provided reference genes

Program Settings