Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 8.3e-285 983.0 495 100.0
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.0e-270 935.3 495 94.1
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.5e-222 776.2 492 78.7
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 4.2e-220 768.1 492 77.6
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 9.3e-220 766.9 492 77.6
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.4e-215 753.1 503 76.9
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 2.4e-215 752.3 492 76.8
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 5.3e-215 751.1 505 75.8
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 9.1e-207 723.8 541 68.9
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.5e-161 573.5 493 59.4
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.0e-157 560.8 492 59.6
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 6.6e-157 558.1 486 59.1
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 7.3e-156 554.7 494 57.9
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 9.5e-156 554.3 487 58.9
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.6e-155 553.5 495 57.2
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 8.1e-155 551.2 495 56.6
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 5.2e-154 548.5 499 57.1
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.3e-152 543.9 495 57.2
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 3.7e-152 542.3 495 56.6
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 3.2e-151 539.3 497 57.3
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 4.1e-151 538.9 493 55.8
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 6.0e-150 535.0 495 56.4
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.0e-149 534.3 473 58.4
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-149 533.5 495 55.6
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 3.9e-149 532.3 495 55.6
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 8.6e-149 531.2 473 57.7
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 8.6e-149 531.2 493 52.9
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.3e-148 529.3 495 54.9
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 3.3e-148 529.3 488 55.9
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.7e-147 525.4 495 54.9
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.4e-146 523.9 495 54.7
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.4e-145 519.2 495 54.7
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 7.6e-145 518.1 495 54.7
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-144 517.3 495 54.7
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 1.7e-144 516.9 497 54.1
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 2.2e-144 516.5 493 55.0
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 2.2e-144 516.5 488 54.3
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.4e-143 513.8 487 54.8
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.4e-143 513.1 497 53.5
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.1e-142 510.0 488 53.3
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 1.0e-141 507.7 483 53.2
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 3.0e-141 506.1 495 54.3
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 1.1e-140 504.2 498 52.2
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.5e-140 503.8 497 52.5
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 1.9e-140 503.4 495 53.3
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.5e-140 503.1 488 52.5
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 5.6e-140 501.9 484 53.1
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.2e-139 500.7 492 54.3
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 4.7e-139 498.8 499 53.1
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.1e-138 497.7 493 51.7
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 1.4e-138 497.3 497 53.1
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 2.4e-138 496.5 495 53.9
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 5.2e-138 495.4 494 54.5
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 9.0e-138 494.6 490 54.1
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.0e-137 493.4 488 52.0
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 3.4e-137 492.7 496 52.6
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.4e-137 492.3 485 54.8
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 6.4e-136 488.4 489 51.9
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 8.4e-136 488.0 497 53.1
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.9e-135 486.9 498 50.2
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 9.3e-135 484.6 490 51.4
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 9.3e-135 484.6 489 52.1
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 3.5e-134 482.6 491 51.1
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 6.0e-134 481.9 496 50.4
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 6.6e-133 478.4 490 52.2
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 6.6e-133 478.4 490 52.2
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 6.6e-133 478.4 489 51.3
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 8.7e-133 478.0 489 52.4
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.1e-132 477.6 492 51.4
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.1e-132 477.6 479 53.4
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 1.5e-132 477.2 489 51.1
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 2.5e-132 476.5 491 51.9
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 4.3e-132 475.7 488 51.4
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 5.6e-132 475.3 492 50.0
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 7.3e-132 474.9 489 52.1
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.3e-131 474.2 486 50.4
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 2.1e-131 473.4 489 51.3
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 2.8e-131 473.0 488 50.4
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.1e-130 471.1 486 51.2
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.8e-130 470.3 485 51.5
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 5.3e-130 468.8 500 50.4
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 9.0e-130 468.0 492 50.4
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 2.6e-129 466.5 489 50.9
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 4.5e-129 465.7 487 51.3
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 5.8e-129 465.3 373 63.0
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.3e-128 464.2 484 51.2
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.9e-128 463.0 486 50.6
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 8.4e-128 461.5 489 50.9
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.1e-127 461.1 488 49.8
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.9e-127 460.3 494 50.6
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 5.4e-127 458.8 483 50.1
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 8.7e-125 451.4 489 49.7
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.5e-124 450.7 491 49.1
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 1.9e-124 450.3 485 49.7
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 2.5e-124 449.9 481 49.7
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.4e-122 444.1 404 55.9
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.8e-122 443.7 491 50.1
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 6.9e-122 441.8 497 48.3
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.4e-119 434.1 483 48.4
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.9e-119 433.7 369 58.5
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 9.3e-119 431.4 495 48.3
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 7.4e-116 421.8 373 56.0
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 6.9e-114 415.2 495 47.5
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 7.6e-113 411.8 490 48.2
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 8.4e-112 408.3 480 48.1
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 7.1e-111 405.2 386 53.4
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 3.7e-107 392.9 469 47.8
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.0e-105 387.1 488 44.5
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 1.4e-101 374.4 436 47.2
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 5.3e-98 362.5 527 38.9
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.0e-93 348.2 470 43.8
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.4e-93 347.8 407 47.9
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 6.9e-90 335.5 478 42.9
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 5.0e-88 329.3 328 52.1
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.9e-87 327.4 376 46.8
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 5.5e-87 325.9 491 36.7
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.4e-87 325.1 413 44.1
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 3.6e-86 323.2 286 57.7
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 6.1e-86 322.4 496 42.1
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.7e-84 315.8 495 39.2
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-83 314.7 288 56.9
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.7e-83 314.3 287 57.1
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.5e-81 306.6 246 62.6
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.8e-74 284.3 380 45.8
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 3.1e-74 283.5 414 39.6
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 4.1e-74 283.1 255 63.9
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.2e-70 271.6 426 39.0
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 5.7e-68 262.7 355 42.0
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 1.8e-66 257.7 184 68.5
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.9e-63 247.7 293 44.7
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.8e-61 241.1 377 38.2
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 1.2e-60 238.4 476 33.4
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.5e-60 238.0 495 32.9
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 2.6e-60 237.3 538 32.3
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 4.4e-60 236.5 185 63.2
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 5.7e-60 236.1 160 68.8
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 2.8e-59 233.8 312 44.2
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 1.4e-58 231.5 263 51.7
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.8e-58 231.1 257 51.4
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 2.7e-57 227.3 490 31.8
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 7.8e-57 225.7 482 32.2
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.0e-56 225.3 624 28.8
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.8e-56 223.4 417 39.3
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 5.6e-55 219.5 377 36.6
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.8e-53 214.5 231 51.1
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.9e-51 207.2 429 32.2
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 4.9e-51 206.5 449 32.3
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.0e-49 201.1 172 60.5
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 4.3e-47 193.4 228 43.9
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.2e-42 177.2 279 39.8
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 2.8e-38 164.1 266 40.2
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 6.2e-38 162.9 342 33.3
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 2.6e-36 157.5 473 28.5
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 2.6e-36 157.5 192 43.2
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 3.4e-36 157.1 189 42.9
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.3e-35 155.2 93 78.5
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 7.8e-33 146.0 459 27.9
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 2.1e-30 137.9 116 60.3
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.8e-30 137.5 97 66.0
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 8.9e-29 132.5 124 47.6
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 1.9e-26 124.8 146 41.8
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 2.4e-26 124.4 134 48.5
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 5.4e-26 123.2 133 48.1
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 9.9e-20 102.4 127 44.1
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 2.2e-19 101.3 305 28.9
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 2.1e-17 94.7 150 37.3
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 3.5e-17 94.0 103 42.7
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 3.3e-15 87.4 172 32.0
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.6e-12 76.3 72 51.4
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 2.2e-11 74.7 146 34.9
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 4.3e-07 60.5 70 34.3


User provided reference genes

Program Settings