Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.3e-284 980.7 520 100.0
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.3e-235 819.7 502 88.6
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 1.2e-185 653.7 505 72.9
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 2.1e-182 642.9 505 73.3
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 2.6e-180 636.0 507 71.8
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 4.6e-177 625.2 507 71.4
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 2.1e-57 227.6 595 33.8
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 2.9e-54 217.2 522 37.0
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 1.4e-53 214.9 550 33.1
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 4.6e-52 209.9 528 34.8
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 1.0e-51 208.8 518 35.5
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.3e-51 207.6 535 35.1
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 3.0e-51 207.2 519 35.1
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 8.7e-51 205.7 542 33.4
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.9e-50 204.5 531 34.1
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 4.3e-50 203.4 541 34.2
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 5.7e-50 203.0 518 33.4
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.6e-49 201.4 552 34.2
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.7e-49 200.3 533 35.3
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.7e-49 200.3 530 33.6
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 8.2e-49 199.1 546 32.8
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 4.1e-48 196.8 139 73.4
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 6.9e-48 196.1 509 32.2
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 2.0e-47 194.5 525 34.7
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 2.0e-47 194.5 512 35.7
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.6e-47 194.1 546 32.6
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 7.6e-47 192.6 546 32.4
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 1.0e-46 192.2 531 33.5
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 1.0e-46 192.2 534 34.1
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.3e-46 191.8 535 33.1
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 2.9e-46 190.7 535 32.3
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 3.8e-46 190.3 559 33.3
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 3.8e-46 190.3 526 36.1
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 5.0e-46 189.9 534 33.0
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 5.0e-46 189.9 517 33.7
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 6.5e-46 189.5 540 32.6
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 6.5e-46 189.5 510 33.1
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 1.1e-45 188.7 525 31.6
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.4e-45 188.3 138 70.3
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 3.2e-45 187.2 524 33.0
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 3.2e-45 187.2 527 34.5
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 4.2e-45 186.8 138 71.0
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.2e-44 185.3 540 32.8
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.6e-44 184.9 542 33.8
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 4.6e-44 183.3 540 33.7
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 7.9e-44 182.6 525 31.6
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.8e-43 181.4 508 33.9
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.3e-43 181.0 523 32.9
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.1e-42 178.7 507 33.5
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.5e-42 178.3 519 31.4
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.9e-42 177.9 453 36.6
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.5e-42 177.6 581 30.6
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 6.3e-41 172.9 507 32.7
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.8e-40 171.4 540 33.0
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 4.1e-40 170.2 517 32.3
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 9.0e-40 169.1 525 32.2
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.2e-39 168.7 533 31.9
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 5.9e-39 166.4 519 31.6
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 5.9e-39 166.4 508 32.5
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 2.2e-38 164.5 525 29.7
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 3.8e-38 163.7 540 31.1
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 6.5e-38 162.9 515 31.7
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 8.5e-38 162.5 336 36.9
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 9.4e-37 159.1 528 29.9
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 7.9e-36 156.0 260 43.5
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 1.0e-35 155.6 553 28.8
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.4e-35 155.2 516 31.8
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 2.3e-35 154.5 496 31.9
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 1.5e-34 151.8 562 30.6
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 2.0e-34 151.4 515 31.8
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.6e-34 151.0 106 69.8
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 2.6e-34 151.0 522 29.9
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 4.4e-34 150.2 542 30.6
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.3e-33 148.7 515 31.3
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 3.7e-33 147.1 514 29.6
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 4.8e-33 146.7 120 66.7
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 6.3e-33 146.4 117 65.8
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 6.3e-33 146.4 559 28.1
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 5.3e-32 143.3 513 30.4
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 1.2e-31 142.1 230 41.7
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.0e-31 141.4 515 29.7
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 2.6e-31 141.0 534 29.4
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 2.6e-31 141.0 524 32.3
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 7.7e-31 139.4 534 30.9
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 7.7e-31 139.4 524 32.1
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.7e-30 138.3 543 29.8
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 3.8e-30 137.1 533 29.1
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.9e-29 134.8 528 29.4
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 4.2e-29 133.7 528 30.5
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 5.5e-29 133.3 547 29.6
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 1.4e-27 128.6 516 30.8
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 1.4e-27 128.6 516 30.8
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.8e-27 128.3 101 65.3
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.5e-26 125.2 537 28.5
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 4.4e-26 123.6 540 28.3
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 1.3e-25 122.1 526 28.5
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.3e-25 122.1 502 29.3
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.1e-24 119.0 513 28.5
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 1.2e-23 115.5 89 65.2
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 1.6e-23 115.2 324 32.7
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 3.5e-23 114.0 375 33.9
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 3.8e-22 110.5 531 27.7
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 3.8e-22 110.5 79 69.6
CAN.G42.6 Capsicum annuum HOM05D006793 ORTHO05D003476 1.1e-21 109.0 127 53.5
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 1.2e-20 105.5 69 78.3
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.0e-19 102.4 417 28.3
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 4.0e-19 100.5 413 30.3
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 5.2e-19 100.1 67 70.1
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.2e-18 99.0 67 67.2
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 1.2e-18 99.0 105 54.3
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 6.3e-17 93.2 229 34.5
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.1e-16 92.4 477 27.9
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 5.3e-16 90.1 265 31.7
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 2.0e-15 88.2 498 26.5
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 5.9e-15 86.7 182 35.7
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 1.1e-13 82.4 353 28.6
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.2e-10 72.4 77 44.2
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 5.7e-10 70.1 72 44.4
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 7.5e-10 69.7 304 28.9
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 7.5e-10 69.7 508 24.8
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 9.8e-10 69.3 76 46.1
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 9.8e-10 69.3 92 47.8
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 9.8e-10 69.3 75 42.7
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 1.7e-09 68.6 81 44.4
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 2.2e-09 68.2 79 43.0
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 3.7e-09 67.4 78 39.7
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.8e-09 67.0 77 44.2
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 8.3e-09 66.2 77 41.6
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 1.1e-08 65.9 61 49.2
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.4e-08 65.5 82 39.0
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.8e-08 65.1 77 42.9
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.8e-08 65.1 185 30.8
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 3.1e-08 64.3 218 27.5
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 3.1e-08 64.3 78 38.5
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 4.1e-08 63.9 77 41.6
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 5.4e-08 63.5 77 35.1
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 5.4e-08 63.5 69 47.8
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 7.0e-08 63.2 50 52.0
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 9.1e-08 62.8 142 28.9
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 9.1e-08 62.8 77 37.7
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 1.2e-07 62.4 80 35.0
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.2e-07 62.4 217 26.7
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.6e-07 62.0 63 42.9
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 2.0e-07 61.6 56 46.4
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.0e-07 61.6 61 45.9
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.0e-07 61.6 99 39.4
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 4.5e-07 60.5 50 52.0
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 5.9e-07 60.1 80 40.0
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 5.9e-07 60.1 50 50.0
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 5.9e-07 60.1 41 73.2
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 5.9e-07 60.1 189 28.0
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 5.9e-07 60.1 76 38.2
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 5.9e-07 60.1 76 40.8
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 7.7e-07 59.7 71 38.0
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 1.3e-06 58.9 62 40.3
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 1.3e-06 58.9 216 28.7
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 1.3e-06 58.9 270 27.0
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 1.7e-06 58.5 50 48.0
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.7e-06 58.5 50 48.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 1.7e-06 58.5 50 48.0
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 1.7e-06 58.5 50 48.0
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.2e-06 58.2 78 39.7
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 2.2e-06 58.2 72 34.7
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 2.9e-06 57.8 62 38.7
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 6.5e-06 56.6 301 25.2
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 6.5e-06 56.6 74 35.1
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 8.5e-06 56.2 204 25.5
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 8.5e-06 56.2 83 36.1


User provided reference genes

Program Settings