Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.7e-117 426.0 218 100.0
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.6e-76 288.1 400 49.0
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.6e-76 288.1 400 49.0
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 2.9e-72 275.8 434 45.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-72 275.4 434 45.4
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 8.4e-72 274.2 404 47.8
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.9e-71 273.1 434 45.4
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 9.3e-71 270.8 434 45.2
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.7e-70 269.2 434 44.7
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 3.5e-70 268.9 434 44.9
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 4.6e-70 268.5 434 44.9
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 4.6e-70 268.5 434 44.9
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 4.6e-70 268.5 434 44.9
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.6e-70 268.5 434 44.9
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 3.9e-69 265.4 410 46.1
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 6.6e-69 264.6 434 44.7
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 2.5e-68 262.7 434 44.5
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 2.5e-68 262.7 434 44.5
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 2.5e-68 262.7 434 44.5
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 2.5e-68 262.7 434 44.5
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.5e-68 262.7 434 44.5
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.5e-68 262.7 434 44.5
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 2.5e-68 262.7 434 44.5
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-67 260.4 434 44.2
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-67 260.4 434 44.2
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-67 260.4 434 44.2
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.6e-67 260.0 420 45.2
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.3e-66 255.0 422 44.3
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.3e-66 255.0 422 44.3
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.3e-66 255.0 422 44.3
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 6.9e-66 254.6 397 45.6
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 1.5e-65 253.4 382 46.9
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.5e-65 253.4 382 46.9
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 3.8e-64 248.8 346 49.4
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 6.4e-64 248.1 422 43.8
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 9.3e-63 244.2 422 43.4
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.2e-62 243.8 422 43.1
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.6e-62 243.4 378 46.0
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 2.1e-62 243.0 314 52.2
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 3.9e-61 238.8 370 45.9
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.9e-60 236.5 391 44.2
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 1.3e-59 233.8 339 47.5
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.8e-59 232.6 407 42.3
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.8e-58 229.9 373 44.8
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.9e-56 221.9 317 47.6
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-55 220.3 321 47.7
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 5.5e-55 218.4 344 45.6
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.7e-54 216.1 373 43.2
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 3.5e-54 215.7 434 39.9
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.3e-51 207.2 296 49.0
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.8e-45 186.8 173 62.4
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 5.1e-45 185.3 322 43.5
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 4.8e-43 178.7 315 43.2
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 2.0e-41 173.3 408 36.5
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-40 170.6 186 55.9
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 1.7e-40 170.2 324 42.3
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.0e-40 168.7 235 48.5
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 5.0e-40 168.7 265 46.0
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 6.5e-40 168.3 236 48.3
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 9.3e-39 164.5 292 42.8
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 3.0e-37 159.5 220 48.6
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.1e-36 157.5 213 47.9
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.1e-36 157.5 213 47.9
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.7e-36 154.5 210 50.5
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.6e-35 153.7 177 54.2
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 2.2e-35 153.3 314 36.9
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 2.8e-35 152.9 220 48.2
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 1.1e-34 151.0 177 53.7
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 1.5e-33 147.1 224 46.0
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.9e-32 142.9 177 52.0
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 5.0e-32 142.1 177 52.0
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.2e-30 137.5 190 49.5
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.9e-29 132.5 248 41.9
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 2.6e-28 129.8 96 70.8
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 5.7e-28 128.6 190 47.4
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 5.7e-28 128.6 190 47.4
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 7.4e-28 128.3 257 40.1
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 7.4e-28 128.3 144 54.9
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 8.2e-27 124.8 145 53.8
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 2.0e-25 120.2 146 53.4
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-24 117.5 135 53.3
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.8e-24 115.9 129 55.0
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 8.5e-24 114.8 92 69.6
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.2e-23 112.5 117 58.1
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.2e-23 112.5 117 58.1
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.2e-23 112.5 117 58.1
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 4.2e-23 112.5 117 58.1
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.5e-23 112.1 190 43.7
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 1.6e-22 110.5 105 61.0
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.3e-21 106.7 170 45.9
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.9e-21 105.9 152 50.7
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.6e-20 103.2 67 80.6
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 3.7e-19 99.4 129 49.6
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.4e-18 97.4 106 50.9
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 2.4e-18 96.7 97 58.8
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-17 93.2 102 56.9
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 4.5e-17 92.4 92 62.0
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 5.0e-16 89.0 70 72.9
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 8.5e-16 88.2 129 46.5
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 6.1e-14 82.0 89 58.4
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.1e-14 82.0 89 56.2
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.8e-13 80.5 76 60.5
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.8e-13 80.5 333 29.4
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 2.3e-13 80.1 126 45.2
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.3e-13 80.1 121 47.9
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 4.0e-13 79.3 64 67.2
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 4.0e-13 79.3 84 57.1
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 5.2e-13 79.0 84 54.8
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 3.3e-12 76.3 175 29.1
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 7.5e-12 75.1 105 50.5
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 1.7e-11 73.9 171 38.0
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 2.2e-11 73.6 73 57.5
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 6.3e-11 72.0 70 60.0
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 8.2e-11 71.6 74 56.8
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 1.4e-10 70.9 166 39.2
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.8e-10 70.5 69 58.0
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 4.1e-10 69.3 63 58.7
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.2e-09 67.8 141 38.3
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.2e-09 67.8 141 38.3
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-09 67.8 43 79.1
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 1.6e-09 67.4 35 91.4
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.6e-09 67.4 41 80.5
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 5.9e-09 65.5 36 88.9
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 5.9e-09 65.5 44 72.7
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 1.7e-08 63.9 46 71.7
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 2.9e-08 63.2 52 63.5
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 3.8e-08 62.8 195 32.8
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 5.0e-08 62.4 43 74.4
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 5.0e-08 62.4 57 59.6
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.9e-07 60.5 92 43.5
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 3.2e-07 59.7 83 47.0
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.6e-06 57.4 30 90.0


User provided reference genes

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