Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.2e-170 601.7 309 100.0
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.5e-135 486.5 297 87.2
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 3.7e-134 481.9 285 89.5
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.6e-132 476.5 297 84.8
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 2.8e-113 412.5 292 73.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 8.1e-113 411.0 286 75.9
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 8.1e-113 411.0 301 72.8
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.1e-112 410.6 295 73.9
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.2e-111 407.1 300 72.7
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.2e-111 407.1 284 75.7
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 2.0e-111 406.4 292 75.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 2.0e-111 406.4 285 75.1
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 7.6e-111 404.4 291 73.5
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.2e-110 402.9 290 71.7
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.9e-110 402.5 294 71.4
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 4.9e-110 401.7 297 71.4
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 6.4e-110 401.4 269 75.8
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 6.4e-110 401.4 294 73.5
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.4e-109 400.2 295 70.8
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.9e-109 399.8 290 72.1
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 2.4e-109 399.4 290 74.5
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.4e-109 399.4 274 77.0
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.2e-109 399.1 285 72.6
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 7.1e-109 397.9 286 73.8
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 3.5e-108 395.6 282 73.8
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.5e-108 395.6 314 69.4
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 3.5e-108 395.6 291 73.9
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 3.5e-108 395.6 291 71.1
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 4.6e-108 395.2 283 73.5
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 6.0e-108 394.8 287 72.1
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.3e-107 393.7 319 65.8
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.8e-107 393.3 283 72.4
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 6.7e-107 391.3 293 71.0
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.5e-106 389.4 286 72.0
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 3.3e-106 389.0 295 70.2
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 5.6e-106 388.3 294 70.4
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.6e-105 386.7 296 68.9
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.6e-105 386.7 253 77.9
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 2.1e-105 386.3 292 70.5
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 3.7e-105 385.6 298 69.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.1e-104 384.0 309 66.7
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.1e-104 384.0 255 76.1
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.4e-104 383.6 290 69.0
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.2e-103 380.6 301 68.8
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.5e-103 380.2 295 68.8
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.0e-103 379.8 259 76.4
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 2.6e-103 379.4 310 67.1
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 3.4e-103 379.0 291 70.1
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 3.4e-103 379.0 288 70.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 4.5e-103 378.6 295 68.8
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 4.5e-103 378.6 293 69.6
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 4.5e-103 378.6 297 67.3
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 5.8e-103 378.3 286 71.3
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 7.6e-103 377.9 248 78.2
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-102 377.5 291 70.1
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.3e-102 377.1 291 70.4
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 4.9e-102 375.2 287 70.0
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 8.4e-102 374.4 293 68.3
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.1e-101 374.0 269 72.5
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.4e-101 373.6 268 73.1
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.4e-101 373.6 282 69.1
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.9e-101 373.2 285 70.5
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.2e-101 372.5 234 86.3
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 4.2e-101 372.1 293 68.3
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 4.2e-101 372.1 288 69.4
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 7.1e-101 371.3 282 68.8
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.6e-100 370.2 295 67.8
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 3.5e-100 369.0 285 69.8
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 6.0e-100 368.2 197 93.9
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.0e-99 367.5 283 68.6
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 1.3e-99 367.1 285 69.8
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.3e-99 367.1 268 72.4
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.3e-99 367.1 289 69.6
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.8e-99 366.7 274 69.3
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 8.7e-99 364.4 298 68.1
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.9e-98 363.2 290 68.3
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 4.3e-98 362.1 290 68.3
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 2.8e-97 359.4 293 66.9
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.0e-95 353.2 291 64.9
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.7e-94 350.1 234 77.8
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 6.5e-94 348.2 234 78.2
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.6e-92 343.6 233 73.8
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.6e-92 343.6 291 64.6
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.3e-91 340.5 237 73.8
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.3e-91 340.5 260 70.4
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 2.3e-91 339.7 252 69.4
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 8.7e-91 337.8 324 58.6
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.1e-90 337.4 301 63.1
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 2.5e-90 336.3 329 56.8
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 3.1e-88 329.3 265 67.2
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 3.1e-88 329.3 234 72.6
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 4.1e-88 328.9 276 63.4
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-87 327.4 265 67.2
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 2.5e-85 319.7 249 66.3
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-84 317.4 285 63.5
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.1e-82 310.8 199 77.9
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 6.9e-80 301.6 292 59.2
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 3.4e-79 299.3 173 82.7
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.3e-78 297.4 284 59.2
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.7e-78 297.0 198 74.2
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-73 280.8 290 57.9
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.8e-73 278.9 177 79.7
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 2.0e-71 273.5 206 68.4
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 1.7e-70 270.4 252 60.7
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.1e-69 267.7 362 48.6
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 2.2e-65 253.4 296 50.3
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 5.7e-58 228.8 235 54.9
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-54 217.2 304 47.7
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.5e-53 214.2 255 45.5
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.2e-52 211.1 242 45.5
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 2.1e-52 210.3 203 56.2
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 6.1e-52 208.8 224 47.3
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-48 197.6 169 58.6
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.9e-41 173.3 137 71.5
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 3.9e-38 162.9 269 43.1
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.9e-33 146.0 92 77.2
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-31 140.2 133 63.2
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 4.6e-31 139.4 133 63.9
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.4e-27 127.9 133 58.6
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 6.8e-27 125.6 105 69.5
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.2e-26 124.8 78 82.1
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.0e-22 110.2 172 40.1
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 3.1e-19 100.1 83 68.7
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 4.0e-19 99.8 144 45.1
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 2.0e-18 97.4 89 60.7
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 1.3e-17 94.7 59 74.6
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-17 94.0 122 41.8
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 2.9e-17 93.6 108 50.0
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 3.8e-17 93.2 241 34.9
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 4.9e-17 92.8 99 54.5
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 7.1e-16 89.0 50 82.0
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 7.8e-15 85.5 200 38.5
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 7.8e-15 85.5 200 38.0
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 2.5e-13 80.5 55 69.1
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 4.3e-13 79.7 56 73.2
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 4.3e-13 79.7 56 73.2
Nitab4.5_0000014g0540 Nicotiana tabacum HOM05D005250 ORTHO05D006342 4.3e-13 79.7 51 80.4
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 9.6e-13 78.6 245 27.8
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.2e-12 78.2 49 75.5
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.6e-12 77.8 112 42.9
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 4.7e-12 76.3 69 65.2
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.2e-10 71.6 59 52.5
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.7e-09 67.8 81 45.7
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 4.9e-09 66.2 56 66.1
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 6.0e-07 59.3 234 20.5
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 1.0e-06 58.5 49 61.2


User provided reference genes

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