Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 2366.3 1186 100.0
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 2175.2 1197 92.3
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 2078.5 1199 89.1
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 2075.4 1197 88.8
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 2070.0 1197 88.6
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 2003.4 1137 89.5
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1851.3 1196 78.2
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1837.4 1198 77.7
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1813.1 1196 76.3
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1804.6 1199 76.8
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1800.4 1205 76.3
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1798.5 1196 76.3
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1797.7 1197 75.9
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1796.6 1200 75.8
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1796.6 1196 75.9
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1792.3 1196 75.6
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1791.2 1202 76.1
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1787.3 1196 75.3
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1786.9 1197 76.3
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1784.2 1199 75.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1779.2 1196 75.7
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1778.8 1222 74.5
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1776.9 1196 75.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1775.8 1199 75.6
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1774.2 1197 74.9
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1773.4 1196 74.7
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1772.7 1199 75.9
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1772.3 1199 74.6
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1771.9 1196 75.0
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1770.0 1196 75.0
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1769.2 1197 75.9
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1766.9 1199 75.4
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1766.1 1169 76.0
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1758.8 1200 74.5
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1756.9 1202 74.6
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1756.5 1203 74.3
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1750.3 1211 73.8
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1750.3 1199 74.1
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1746.1 1198 73.9
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1745.7 1195 74.4
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1745.7 1196 74.1
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1742.2 1196 74.2
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1741.9 1195 73.4
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1740.7 1198 74.1
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1740.3 1195 74.0
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1739.9 1197 74.4
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1737.2 1214 73.1
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1736.9 1198 74.1
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1736.5 1197 73.7
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1735.3 1196 74.2
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1735.3 1257 70.9
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1735.3 1199 73.6
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1733.8 1196 73.2
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1731.8 1151 76.5
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1718.7 1194 73.2
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1716.8 1198 72.5
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1714.5 1194 73.2
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1708.0 1196 72.4
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1705.3 1197 71.9
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1697.9 1197 73.2
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1697.6 1200 72.5
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1690.2 1259 69.6
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1679.8 1196 71.9
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1678.3 1200 72.0
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1676.4 1198 71.6
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1670.6 1198 71.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1668.7 1045 79.3
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1656.0 1147 73.3
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1654.8 1394 64.6
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1637.9 1200 70.5
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1633.6 1225 70.6
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1627.8 1199 69.6
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1624.0 1196 70.4
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1617.1 1319 65.3
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1610.1 1218 68.2
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1598.6 1195 68.2
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1597.4 1197 68.1
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1588.5 1199 68.1
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1586.2 1199 67.9
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1578.1 1196 67.4
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1573.5 1197 67.8
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1559.3 1195 67.4
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1559.3 1195 67.4
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1550.8 1241 67.4
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1545.0 1195 67.1
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1544.3 1195 67.1
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1519.6 1023 75.0
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1509.2 1226 65.1
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1489.2 1194 64.2
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1485.7 1194 64.2
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1471.8 1194 63.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1451.4 1235 63.5
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1448.3 1193 64.1
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1443.3 842 84.8
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1442.2 838 85.1
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1411.0 940 75.4
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1384.4 1179 62.8
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1377.5 1050 68.5
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1332.8 930 71.4
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1208.0 1199 56.0
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1176.0 788 75.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1168.7 826 71.1
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1149.8 747 77.2
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1086.2 1213 48.1
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 3.6e-294 1015.4 1192 47.7
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.4e-290 1003.4 1593 40.1
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.4e-282 976.1 1220 45.4
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 3.3e-263 912.5 1220 42.5
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.6e-262 909.1 582 79.7
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 7.1e-258 894.8 679 68.5
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.1e-257 893.3 673 66.6
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.1e-257 893.3 1457 37.3
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 8.4e-251 871.3 596 75.2
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.2e-234 816.2 742 58.4
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 1.5e-210 737.6 454 79.5
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 2.4e-205 720.3 553 66.9
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.3e-192 677.2 502 69.9
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 5.2e-184 649.4 434 71.9
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.6e-169 600.1 594 51.9
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 4.8e-137 493.4 312 77.6
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.9e-133 481.5 456 57.7
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.9e-125 454.9 399 65.7
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 7.2e-125 453.0 446 59.2
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 9.4e-101 372.9 822 33.2
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.1e-88 332.8 770 31.3
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 1.3e-78 299.3 1114 25.3
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.6e-76 291.2 189 75.1
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.8e-72 278.9 364 45.6
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.1e-67 261.5 302 52.6
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 9.5e-61 240.0 258 57.8
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.1e-59 236.5 196 63.3
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 7.5e-58 230.3 287 49.8
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.2e-57 228.8 212 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 6.0e-55 220.7 321 39.9
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.3e-53 214.5 610 32.1
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 8.9e-51 206.8 192 56.8
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.3e-49 203.0 208 53.4
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.6e-47 196.1 169 60.4
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.7e-46 192.6 219 45.7
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.6e-42 178.7 329 40.1
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 7.8e-39 167.2 165 60.6
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 3.9e-38 164.9 188 54.8
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 2.5e-37 162.2 765 23.5
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.5e-34 151.4 183 49.2
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.6e-31 142.9 87 80.5
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 6.0e-31 141.0 85 80.0
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 9.0e-27 127.1 85 72.9
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.7e-23 115.5 164 44.5
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.0e-22 113.6 138 50.7
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.9e-21 109.4 65 76.9
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.1e-19 103.6 78 65.4
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.4e-19 103.2 161 39.8
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.0e-17 97.1 75 69.3
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.0e-17 97.1 70 67.1
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.4e-16 93.2 69 68.1
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 1.9e-16 92.8 95 54.7
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.5e-13 83.2 56 71.4
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.3e-13 82.0 81 56.8
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 3.3e-13 82.0 45 80.0
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 3.7e-12 78.6 145 38.6
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 6.3e-12 77.8 59 66.1
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 6.9e-11 74.3 56 60.7
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 4.5e-10 71.6 48 70.8
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 1.1e-08 67.0 51 72.5
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.7e-07 62.4 45 68.9
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 2.7e-07 62.4 34 73.5
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.3e-06 59.3 117 36.8
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 8.8e-06 57.4 66 43.9


User provided reference genes

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