Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 0.0e+00 1126.7 560 100.0
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.3e-289 999.2 591 87.3
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 6.5e-270 933.7 613 79.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 8.5e-270 933.3 613 78.5
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 5.5e-269 930.6 613 78.1
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 6.1e-268 927.2 610 78.5
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 2.3e-267 925.2 613 78.1
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 3.1e-211 738.8 588 64.6
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.8e-210 734.6 614 62.2
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.3e-209 733.4 614 62.1
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.6e-207 726.5 612 61.9
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 4.5e-202 708.4 627 60.1
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.1e-199 699.5 594 61.4
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.5e-197 693.3 614 59.6
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 6.9e-195 684.5 587 62.0
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.7e-193 679.9 607 58.2
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 1.6e-188 663.3 614 57.3
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 7.6e-186 654.4 619 57.4
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 5.5e-184 648.3 529 63.3
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 7.2e-184 647.9 617 56.7
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.5e-181 640.2 620 55.5
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 7.4e-181 637.9 617 55.1
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.4e-176 623.6 616 53.6
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 3.2e-176 622.5 572 57.0
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 8.8e-174 614.4 617 53.5
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 2.0e-173 613.2 616 53.1
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 3.3e-173 612.5 642 53.6
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.3e-172 610.5 610 53.6
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.7e-172 610.1 619 53.3
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 1.8e-171 606.7 617 54.0
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 4.1e-171 605.5 617 53.5
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 4.1e-171 605.5 618 52.4
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 2.0e-170 603.2 618 51.8
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 2.6e-170 602.8 620 53.1
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.4e-170 602.4 600 54.3
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 5.9e-170 601.7 614 53.1
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.3e-169 600.5 572 55.2
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.9e-168 596.7 623 51.7
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 7.2e-168 594.7 617 50.9
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.4e-166 590.5 619 51.7
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.8e-166 590.1 616 51.1
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.9e-166 589.0 599 53.9
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 8.8e-166 587.8 593 52.6
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.5e-165 587.0 612 51.8
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 3.3e-165 585.9 616 52.1
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 9.7e-165 584.3 578 54.2
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 8.2e-164 581.3 621 52.0
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 3.1e-163 579.3 601 52.2
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 4.5e-162 575.5 618 51.3
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 2.2e-161 573.2 609 51.1
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 3.8e-161 572.4 649 48.8
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 8.5e-161 571.2 527 56.0
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 3.2e-160 569.3 623 50.9
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 2.1e-159 566.6 623 50.7
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 6.1e-159 565.1 599 52.6
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 8.0e-159 564.7 619 48.5
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.0e-158 564.3 628 50.5
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 5.2e-158 562.0 686 46.9
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.0e-157 560.1 619 48.1
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 4.4e-157 558.9 616 49.5
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 2.8e-156 556.2 620 50.3
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.7e-156 555.8 626 48.6
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.1e-155 554.3 615 49.8
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 3.1e-155 552.7 620 48.4
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 3.5e-154 549.3 621 49.8
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.0e-153 547.7 615 49.1
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 1.3e-153 547.4 619 47.8
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.7e-153 547.0 623 49.1
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 2.2e-153 546.6 620 50.2
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 5.0e-153 545.4 619 49.4
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 3.2e-152 542.7 618 49.2
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.2e-151 540.8 618 49.2
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.2e-151 540.8 580 49.3
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.7e-151 539.7 592 50.3
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 2.7e-151 539.7 618 47.7
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 8.0e-151 538.1 619 49.3
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 5.7e-149 531.9 619 47.7
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 7.5e-149 531.6 620 48.7
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 9.8e-149 531.2 616 47.4
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.8e-148 529.6 656 46.8
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 3.1e-147 526.2 616 47.7
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 7.0e-147 525.0 619 46.8
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 2.0e-146 523.5 620 47.1
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 5.9e-146 521.9 618 46.1
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 5.9e-146 521.9 617 47.3
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.0e-145 521.2 563 49.2
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 1.0e-145 521.2 621 48.3
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.3e-145 520.8 617 46.7
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.7e-145 520.4 619 48.5
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 2.9e-145 519.6 615 46.3
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 5.0e-145 518.8 615 46.3
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 2.5e-144 516.5 615 46.3
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 7.2e-144 515.0 615 46.0
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.2e-143 514.2 615 46.0
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 8.0e-143 511.5 622 46.9
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 3.0e-142 509.6 618 46.9
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 6.6e-137 491.9 625 44.6
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 8.6e-137 491.5 677 43.1
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 5.4e-131 472.2 617 43.6
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.8e-126 457.2 580 44.8
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 2.2e-124 450.3 487 50.9
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.6e-120 435.6 640 40.5
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.6e-120 435.6 640 40.5
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.4e-118 431.0 637 40.3
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 2.4e-110 403.7 622 39.9
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 8.9e-110 401.7 555 43.8
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 5.6e-96 355.9 535 38.9
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 9.6e-96 355.1 648 35.3
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.8e-92 343.2 367 53.7
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 7.1e-91 339.0 515 40.0
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-85 321.6 363 51.2
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.8e-84 316.6 384 45.1
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 6.2e-79 299.3 397 43.3
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.2e-76 290.8 572 32.0
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 2.3e-73 280.8 237 62.4
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 1.0e-68 265.4 498 34.1
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 2.4e-46 191.0 215 46.5
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 7.2e-43 179.5 143 61.5
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.4e-41 175.3 603 25.2
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 8.8e-41 172.6 548 28.3
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 7.5e-40 169.5 713 23.8
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.0e-32 144.8 91 74.7
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 8.3e-31 139.4 128 53.1
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.8e-30 138.3 160 48.1
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 5.5e-27 126.7 121 53.7
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.8e-25 121.7 150 46.0
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 5.7e-24 116.7 202 34.2
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.3e-23 115.5 280 30.4
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 3.1e-22 110.9 95 57.9
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 7.0e-22 109.8 243 33.7
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 3.4e-16 90.9 58 69.0
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.4e-14 83.6 541 21.4
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 5.4e-14 83.6 123 43.1
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 5.6e-11 73.6 54 61.1
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 7.3e-11 73.2 47 66.0
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.1e-10 71.6 48 72.9
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 3.6e-10 70.9 107 42.1
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.6e-08 64.7 43 69.8
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 3.4e-08 64.3 48 68.8
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 3.4e-08 64.3 37 75.7
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 7.5e-08 63.2 62 48.4
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 2.2e-07 61.6 118 39.0
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 4.9e-07 60.5 66 51.5
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 1.1e-06 59.3 45 66.7
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 1.9e-06 58.5 102 34.3
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.9e-06 58.5 48 64.6
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 2.4e-06 58.2 59 52.5
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.4e-06 58.2 136 30.9
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 7.0e-06 56.6 62 40.3
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 9.2e-06 56.2 102 35.3


User provided reference genes

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