Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000575g0160 Nicotiana tabacum HOM05D008287 ORTHO05D010110 2.1e-27 125.6 95 100.0
Nitab4.5_0010206g0030 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.0e-21 106.7 80 92.5
PGSC0003DMG400012876 Solanum tuberosum HOM05D008287 ORTHO05D010110 3.4e-17 91.7 95 60.0
Sopen04g019400 Solanum pennellii HOM05D008287 ORTHO05D010110 7.5e-17 90.5 95 58.9
Solyc04g049407.1 Solanum lycopersicum HOM05D008287 ORTHO05D010110 1.2e-14 83.2 80 53.8
Hma1.2p1_0063F.1_g034480 Hydrangea macrophylla HOM05D008287 ORTHO05D010110 5.0e-13 77.8 80 48.8
Actinidia38852 Actinidia chinensis HOM05D008287 ORTHO05D010110 2.5e-12 75.5 96 50.0
Gohir.D13G023100 Gossypium hirsutum HOM05D008287 ORTHO05D010110 2.5e-12 75.5 102 49.0
MSTRG.9186 Avicennia marina HOM05D008287 ORTHO05D010110 3.2e-12 75.1 93 50.5
Gorai.013G025800 Gossypium raimondii HOM05D008287 ORTHO05D010110 3.2e-12 75.1 103 48.5
TAR629G1172 Trochodendron aralioides HOM05D008287 ORTHO05D010110 4.2e-12 74.7 80 46.2
Gohir.A13G024200 Gossypium hirsutum HOM05D008287 ORTHO05D010110 5.5e-12 74.3 102 48.0
Nn2g10792 Nelumbo nucifera HOM05D008287 ORTHO05D010110 5.5e-12 74.3 95 45.3
CiPaw.01G272900 Carya illinoinensis HOM05D008287 ORTHO05D010110 9.5e-12 73.6 91 54.9
Potri.010G222400 Populus trichocarpa HOM05D008287 ORTHO05D010110 1.2e-11 73.2 98 61.2
Thecc.10G073600 Theobroma cacao HOM05D008287 ORTHO05D010110 1.2e-11 73.2 97 46.4
Manes.10G045900 Manihot esculenta HOM05D008287 ORTHO05D010110 1.6e-11 72.8 94 45.7
Aqoxy1G01238 Aquilegia oxysepala HOM05D008287 ORTHO05D010110 3.6e-11 71.6 80 45.0
Sc09g0006380 Simmondsia chinensis HOM05D008287 ORTHO05D010110 6.1e-11 70.9 80 42.5
Duzib114G0252 Durio zibethinus HOM05D008287 ORTHO05D010110 8.0e-11 70.5 98 44.9
Migut.F02005 Erythranthe guttata HOM05D008287 ORTHO05D010110 8.0e-11 70.5 95 49.5
Sabra10G0172000 Salix brachista HOM05D008287 ORTHO05D010110 1.8e-10 69.3 83 39.8
HanXRQChr01g0011461 Helianthus annuus HOM05D008287 ORTHO05D010110 3.0e-10 68.6 83 47.0
Potri.008G039901 Populus trichocarpa HOM05D008287 ORTHO05D010110 1.2e-09 66.6 83 55.4
Rhsim09G0151900 Rhododendron simsii HOM05D008287 ORTHO05D010110 1.5e-09 66.2 90 42.2
Cc06_g14360 Coffea canephora HOM05D008287 ORTHO05D010110 3.4e-09 65.1 104 51.0
TPR.G822 Trifolium pratense HOM05D008287 ORTHO05D010110 9.8e-09 63.5 83 43.4
Ciclev10033160m.g Citrus clementina HOM05D008287 ORTHO05D010110 1.7e-08 62.8 86 43.0
Cfa021511 Carpinus fangiana HOM05D008287 ORTHO05D010110 2.2e-08 62.4 90 44.4
ClCG05G021010 Citrullus lanatus HOM05D008287 ORTHO05D010110 2.8e-08 62.0 85 38.8
Prupe.2G213800 Prunus persica HOM05D008287 ORTHO05D010110 6.3e-08 60.8 105 40.0
Atru.chr12.751 Acer truncatum HOM05D008287 ORTHO05D010110 8.3e-08 60.5 87 36.8
CsaV3_5G036300 Cucumis sativus L. HOM05D008287 ORTHO05D010110 8.3e-08 60.5 98 41.8
FAN01G1692 Fragaria x ananassa HOM05D008287 ORTHO05D010110 8.3e-08 60.5 39 66.7
Sabra08G0027300 Salix brachista HOM05D008287 ORTHO05D010110 1.1e-07 60.1 34 70.6
FAN10G2561 Fragaria x ananassa HOM05D008287 ORTHO05D010110 1.4e-07 59.7 39 66.7
MBI10_g13401_MAGBIO Magnolia biondii HOM05D008287 ORTHO05D010110 1.8e-07 59.3 80 37.5
FvH4_7g19600 Fragaria vesca HOM05D008287 ORTHO05D010110 2.4e-07 58.9 39 66.7
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 2.4e-07 58.9 39 66.7
Atru.chr12.776 Acer truncatum HOM05D008287 ORTHO05D010110 4.1e-07 58.2 87 35.6
RcHm_v2.0_Chr1g0363411 Rosa chinensis HOM05D008287 ORTHO05D010110 4.1e-07 58.2 39 66.7
Lalb_Chr19g0129701 Lupinus albus HOM05D008287 ORTHO05D010110 5.4e-07 57.8 80 36.2
Phvul.004G082500 Phaseolus vulgaris HOM05D008287 ORTHO05D010110 7.0e-07 57.4 81 34.6
ECA238G2524 Erigeron canadensis HOM05D008287 ORTHO05D010110 1.2e-06 56.6 81 40.7
CSS0035042 Camellia sinensis var. sinensis HOM05D008287 ORTHO05D010110 1.6e-06 56.2 32 71.9
MD01G1108600 Malus domestica HOM05D008287 ORTHO05D010110 2.0e-06 55.8 37 64.9
SGA_v2.0_scaffold62G21430 Striga asiatica HOM05D008287 ORTHO05D010110 2.0e-06 55.8 32 68.8
FAN03G0373 Fragaria x ananassa HOM05D008287 ORTHO05D010110 3.5e-06 55.1 39 64.1
arahy.Tifrunner.gnm1.ann1.7IIA7U Arachis hypogaea HOM05D008287 ORTHO05D010110 4.5e-06 54.7 82 52.4
arahy.Tifrunner.gnm1.ann1.LAB5TB Arachis hypogaea HOM05D008287 ORTHO05D010110 4.5e-06 54.7 82 53.7
Lsat_1_v5_gn_2_114761 Lactuca sativa HOM05D008287 ORTHO05D010110 4.5e-06 54.7 81 51.9
Glyma.16G154900 Glycine max HOM05D008287 ORTHO05D010110 5.9e-06 54.3 82 36.6
PGR142G4013 Punica granatum HOM05D008287 ORTHO05D010110 5.9e-06 54.3 35 65.7


User provided reference genes

Program Settings