Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 6.2e-42 174.1 115 100.0
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.1e-30 136.7 118 86.4
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 4.6e-21 104.8 122 70.5
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 3.7e-18 95.1 130 62.3
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 1.1e-17 93.6 128 67.2
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 1.1e-17 93.6 127 66.1
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 3.4e-16 88.6 122 68.9
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 3.2e-14 82.0 95 66.3
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 7.2e-14 80.9 117 61.5
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 2.1e-13 79.3 89 62.9
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 2.1e-13 79.3 89 62.9
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 2.7e-13 79.0 131 48.9
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 3.6e-13 78.6 95 62.1
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 4.6e-13 78.2 86 72.1
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 1.8e-12 76.3 98 61.2
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 1.8e-12 76.3 93 61.3
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 3.9e-12 75.1 118 55.1
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 3.9e-12 75.1 125 56.8
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 6.7e-12 74.3 117 54.7
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 8.8e-12 73.9 93 59.1
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 8.8e-12 73.9 93 62.4
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 1.5e-11 73.2 84 71.4
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 2.0e-11 72.8 134 48.5
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 2.5e-11 72.4 130 43.1
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 3.3e-11 72.0 132 49.2
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 4.3e-11 71.6 88 61.4
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 1.3e-10 70.1 111 51.4
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 1.7e-10 69.7 78 69.2
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 1.7e-10 69.7 89 49.4
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 2.8e-10 68.9 127 47.2
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 3.7e-10 68.6 110 58.2
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 4.8e-10 68.2 121 55.4
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 6.3e-10 67.8 84 69.0
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 8.2e-10 67.4 82 63.4
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.4e-09 66.6 90 64.4
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.4e-09 66.6 87 58.6
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 2.4e-09 65.9 93 47.3
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 3.1e-09 65.5 87 63.2
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 3.1e-09 65.5 82 65.9
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 3.1e-09 65.5 128 49.2
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 3.1e-09 65.5 128 49.2
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 3.1e-09 65.5 116 50.9
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 4.1e-09 65.1 93 47.3
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 5.3e-09 64.7 83 60.2
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 6.9e-09 64.3 128 49.2
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 9.1e-09 63.9 135 45.2
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 1.2e-08 63.5 85 61.2
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 1.5e-08 63.2 113 48.7
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 1.5e-08 63.2 112 40.2
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 2.0e-08 62.8 114 52.6
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 2.0e-08 62.8 83 51.8
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 2.6e-08 62.4 79 65.8
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 3.4e-08 62.0 43 72.1
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 4.5e-08 61.6 80 60.0
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 4.5e-08 61.6 37 83.8
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 5.9e-08 61.2 42 76.2
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 5.9e-08 61.2 130 41.5
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 7.7e-08 60.8 83 61.4
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 7.7e-08 60.8 83 61.4
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 7.7e-08 60.8 83 59.0
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 1.0e-07 60.5 77 62.3
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 1.3e-07 60.1 84 59.5
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 1.7e-07 59.7 88 56.8
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 1.7e-07 59.7 41 68.3
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 2.2e-07 59.3 115 52.2
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 2.9e-07 58.9 88 56.8
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 2.9e-07 58.9 74 50.0
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 2.9e-07 58.9 84 61.9
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 2.9e-07 58.9 78 56.4
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 2.9e-07 58.9 39 76.9
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 3.8e-07 58.5 89 58.4
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 3.8e-07 58.5 89 59.6
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 3.8e-07 58.5 72 70.8
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 5.0e-07 58.2 77 64.9
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 5.0e-07 58.2 120 50.0
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 5.0e-07 58.2 37 75.7
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 6.5e-07 57.8 83 59.0
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 6.5e-07 57.8 121 51.2
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 6.5e-07 57.8 83 62.7
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 1.1e-06 57.0 83 60.2
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 1.4e-06 56.6 37 81.1
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 1.9e-06 56.2 123 36.6
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 2.5e-06 55.8 116 50.9
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 3.2e-06 55.5 120 49.2
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 3.2e-06 55.5 120 49.2
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 3.2e-06 55.5 39 69.2
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 5.5e-06 54.7 108 56.5
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 5.5e-06 54.7 81 51.9
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 5.5e-06 54.7 74 60.8
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 5.5e-06 54.7 44 72.7
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 9.4e-06 53.9 77 64.9
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 9.4e-06 53.9 39 69.2


User provided reference genes

Program Settings