Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.2e-82 308.9 154 100.0
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 8.0e-77 290.4 151 94.0
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 4.8e-74 281.2 151 90.1
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 9.1e-73 276.9 151 88.7
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 5.9e-72 274.2 151 87.4
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.3e-71 273.1 151 86.8
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.7e-69 265.4 151 84.1
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 3.6e-69 265.0 151 84.8
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.5e-67 259.6 151 83.4
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.2e-64 250.0 151 82.8
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 3.8e-63 245.0 151 81.5
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 8.0e-61 237.3 130 86.9
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 8.9e-52 207.2 151 64.9
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.6e-51 205.7 151 66.9
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 1.7e-50 203.0 151 66.2
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.7e-50 203.0 151 64.9
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.9e-50 202.2 151 66.2
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.1e-49 200.3 151 58.9
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.9e-49 199.5 151 62.9
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 7.0e-49 197.6 151 63.6
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.2e-48 196.8 152 63.2
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 2.7e-48 195.7 151 61.6
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 4.6e-48 194.9 154 63.0
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 7.8e-48 194.1 152 63.2
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.0e-47 193.7 151 62.3
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.0e-47 193.7 180 55.6
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.3e-47 193.4 153 59.5
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.7e-47 193.0 153 58.8
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.0e-47 192.2 152 61.2
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 5.0e-47 191.4 151 61.6
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 6.6e-47 191.0 191 52.9
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 8.6e-47 190.7 151 58.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.1e-46 190.3 151 57.6
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 1.9e-46 189.5 152 56.6
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.5e-46 189.1 165 58.2
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 5.6e-46 188.0 155 59.4
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 7.3e-46 187.6 151 57.0
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 2.1e-45 186.0 152 61.2
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 3.6e-45 185.3 174 51.1
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 3.6e-45 185.3 151 57.6
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 3.6e-45 185.3 151 59.6
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.1e-44 183.7 155 56.1
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.1e-44 183.7 152 56.6
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.8e-44 183.0 152 59.9
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.3e-44 182.6 151 57.0
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 2.3e-44 182.6 154 59.1
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 4.0e-44 181.8 151 57.0
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 6.8e-44 181.0 190 52.6
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 8.9e-44 180.6 151 57.0
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.5e-43 179.9 151 55.6
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.5e-43 179.9 152 53.9
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.5e-43 179.9 151 56.3
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.0e-43 179.5 148 56.8
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 2.0e-43 179.5 151 57.6
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.0e-43 179.5 151 58.3
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.6e-43 179.1 151 54.3
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 4.4e-43 178.3 151 55.6
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 5.8e-43 177.9 172 53.5
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 5.8e-43 177.9 151 56.3
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 5.8e-43 177.9 154 57.8
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 9.8e-43 177.2 151 57.6
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.3e-42 176.8 152 55.9
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 1.3e-42 176.8 154 56.5
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.3e-42 176.8 154 56.5
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.3e-42 176.8 154 56.5
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.2e-42 176.0 148 58.1
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.2e-42 176.0 154 55.8
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.2e-42 176.0 154 55.8
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.9e-42 175.6 151 53.6
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.9e-42 174.9 151 55.0
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.1e-41 173.7 151 55.0
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.9e-41 172.9 151 57.6
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 3.2e-41 172.2 154 55.2
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 5.4e-41 171.4 151 55.6
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 7.1e-41 171.0 151 56.3
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 9.2e-41 170.6 151 55.6
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.2e-40 170.2 193 46.1
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.2e-40 170.2 149 57.7
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.2e-40 170.2 151 56.3
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.6e-40 169.9 173 50.3
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.6e-40 169.9 188 50.5
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 3.5e-40 168.7 152 50.0
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 4.6e-40 168.3 151 54.3
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 6.0e-40 167.9 151 55.0
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 6.0e-40 167.9 115 67.0
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.0e-39 167.2 151 54.3
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.0e-39 165.6 127 60.6
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 5.1e-39 164.9 149 55.0
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 6.6e-39 164.5 154 56.5
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.1e-38 163.7 151 51.7
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.5e-38 163.3 151 51.7
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.5e-38 163.3 151 51.7
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.5e-38 163.3 112 65.2
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 3.6e-37 158.7 152 53.9
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 4.7e-37 158.3 151 50.3
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.1e-36 157.1 126 56.3
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.4e-36 156.8 127 59.8
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 6.8e-36 154.5 153 52.9
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.9e-36 154.1 101 67.3
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.9e-36 154.1 101 67.3
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 3.4e-35 152.1 117 63.2
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 5.8e-35 151.4 152 53.9
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 7.6e-35 151.0 117 60.7
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.2e-34 149.4 156 49.4
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 8.4e-34 147.5 101 67.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.9e-33 146.4 110 59.1
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 1.9e-33 146.4 152 48.0
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 5.4e-33 144.8 153 47.7
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.2e-32 143.7 154 47.4
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.3e-31 140.2 94 66.0
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.7e-31 139.8 94 69.1
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 5.6e-30 134.8 96 65.6
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 5.6e-30 134.8 107 55.1
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 7.3e-30 134.4 74 85.1
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 8.1e-29 131.0 151 45.0
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 2.0e-27 126.3 110 53.6
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.1e-25 120.6 197 38.1
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.2e-24 117.1 119 48.7
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 4.6e-24 115.2 115 49.6
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.7e-23 113.2 112 49.1
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 2.3e-23 112.8 152 41.4
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 8.7e-23 110.9 148 39.9
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 8.7e-23 110.9 116 50.0
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.1e-21 106.3 70 70.0
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.1e-21 106.3 70 70.0
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.8e-20 103.2 70 68.6
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.0e-20 102.1 70 67.1
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.0e-20 100.9 83 60.2
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-19 100.1 71 62.0
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.5e-19 100.1 96 43.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.6e-19 97.8 81 59.3
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.1e-17 94.0 153 35.9
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 9.3e-17 90.9 90 52.2
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.3e-15 87.0 115 41.7
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 3.9e-15 85.5 63 60.3
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 6.6e-15 84.7 82 51.2
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.5e-14 83.6 82 51.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.6e-13 79.0 144 33.3
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.2e-11 73.9 93 35.5
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 5.8e-11 71.6 42 76.2
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 2.2e-10 69.7 46 67.4
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.9e-10 69.3 51 56.9
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.4e-10 68.2 51 56.9
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.4e-09 67.0 51 54.9
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 9.3e-09 64.3 48 62.5
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.2e-08 63.9 56 53.6
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 6.7e-07 58.2 37 75.7
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 4.3e-06 55.5 32 68.8


User provided reference genes

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