Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000555g0230 Nicotiana tabacum HOM05D017514 ORTHO05D009846 2.1e-212 742.7 546 100.0
Nitab4.5_0004131g0040 Nicotiana tabacum HOM05D017514 ORTHO05D009846 1.1e-173 614.0 550 83.3
Sopen08g002390 Solanum pennellii HOM05D017514 ORTHO05D009846 1.6e-58 231.5 575 48.7
PGSC0003DMG400026295 Solanum tuberosum HOM05D017514 ORTHO05D009846 1.0e-54 218.8 578 46.9
CAN.G673.17 Capsicum annuum HOM05D017514 ORTHO05D009846 1.2e-53 215.3 585 48.9
Peaxi162Scf00045g01739 Petunia axillaris HOM05D017514 ORTHO05D009846 8.0e-47 192.6 202 72.8
Solyc08g006440.4 Solanum lycopersicum HOM05D017514 ORTHO05D009846 1.1e-35 155.6 569 34.4
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 8.1e-31 139.4 344 37.8
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 2.0e-29 134.8 359 39.3
Sopen08g022670 Solanum pennellii HOM05D009522 ORTHO05D009846 2.4e-27 127.9 354 39.5
PGSC0003DMG400029579 Solanum tuberosum HOM05D009522 ORTHO05D009846 5.4e-27 126.7 357 41.7
Peaxi162Scf00459g00082 Petunia axillaris HOM05D009522 ORTHO05D009846 1.6e-26 125.2 436 33.5
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 1.3e-25 122.1 411 33.8
Nitab4.5_0001159g0190 Nicotiana tabacum HOM05D009522 ORTHO05D009846 2.3e-25 121.3 409 32.8
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 2.5e-24 117.9 413 32.9
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 1.6e-23 115.2 410 32.9
Solyc08g069020.1 Solanum lycopersicum HOM05D009522 ORTHO05D009846 8.1e-23 112.8 354 41.0
Nitab4.5_0002023g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 5.2e-22 110.2 352 41.2
CAN.G566.64 Capsicum annuum HOM05D009522 ORTHO05D009846 2.7e-18 97.8 405 31.6
Sopen12g032250 Solanum pennellii HOM05D009522 ORTHO05D009846 1.3e-17 95.5 397 31.7
Nitab4.5_0000502g0110 Nicotiana tabacum HOM05D009522 ORTHO05D009846 3.9e-17 94.0 346 32.1
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 2.7e-10 71.2 350 31.4
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 1.0e-09 69.3 355 31.8
MSTRG.25778 Avicennia marina HOM05D009522 ORTHO05D009846 2.3e-09 68.2 41 82.9
MSTRG.11810 Avicennia marina HOM05D009522 ORTHO05D009846 3.9e-09 67.4 44 77.3
Migut.A00437 Erythranthe guttata HOM05D009522 ORTHO05D009846 3.9e-09 67.4 53 67.9
Medtr3g108830 Medicago truncatula HOM05D013197 ORTHO05D009846 1.9e-08 65.1 45 73.3
HPP92_010321 Vanilla planifolia HOM05D027320 ORTHO05D016335 2.5e-08 64.7 85 49.4
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 5.6e-08 63.5 356 29.2
SGA_v2.0_scaffold121G33031 Striga asiatica HOM05D009522 ORTHO05D009846 5.6e-08 63.5 40 80.0
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 9.6e-08 62.8 343 30.6
MSTRG.13944 Avicennia marina HOM05D009522 ORTHO05D009846 2.8e-07 61.2 84 48.8
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 2.8e-07 61.2 45 71.1
QL12p025151 Quercus lobata HOM05D013263 ORTHO05D009846 3.6e-07 60.8 86 45.3
SalBow8G0117 Salvia bowleyana HOM05D036756 ORTHO05D009846 3.6e-07 60.8 63 55.6
SalBow8G1342 Salvia bowleyana HOM05D036756 ORTHO05D009846 3.6e-07 60.8 63 55.6
Migut.E01423 Erythranthe guttata HOM05D009522 ORTHO05D009846 4.8e-07 60.5 38 81.6
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 4.8e-07 60.5 86 43.0
Lsat_1_v5_gn_3_25381 Lactuca sativa HOM05D033113 ORTHO05D009846 4.8e-07 60.5 60 56.7
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 8.1e-07 59.7 48 68.8
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 8.1e-07 59.7 45 71.1
CDE05G3476 Ceratophyllum demersum HOM05D003021 ORTHO05D002235 1.1e-06 59.3 42 69.0
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.1e-06 59.3 47 66.0
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 1.1e-06 59.3 69 58.0
Lj8P444T9 Lonicera japonica HOM05D009522 ORTHO05D009846 1.4e-06 58.9 89 43.8
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 1.8e-06 58.5 47 66.0
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 1.8e-06 58.5 45 68.9
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 1.8e-06 58.5 86 44.2
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.8e-06 58.5 47 66.0
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.8e-06 58.5 45 68.9
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.8e-06 58.5 45 68.9
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 1.8e-06 58.5 45 68.9
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 1.8e-06 58.5 70 51.4
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 2.4e-06 58.2 47 66.0
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.4e-06 58.2 86 43.0
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.4e-06 58.2 86 44.2
Nitab4.5_0001211g0040 Nicotiana tabacum HOM05D003021 ORTHO05D022173 2.4e-06 58.2 69 49.3
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 2.4e-06 58.2 47 66.0
SGA_v2.0_scaffold27G11671 Striga asiatica HOM05D009522 ORTHO05D009846 2.4e-06 58.2 209 34.0
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 3.1e-06 57.8 47 61.7
ATR0564G160 Amborella trichopoda HOM05D003021 ORTHO05D002235 3.1e-06 57.8 44 70.5
CAN.G479.38 Capsicum annuum HOM05D003021 ORTHO05D022173 3.1e-06 57.8 48 62.5
Ca_15666_v3 Cicer arietinum L. HOM05D013197 ORTHO05D009846 3.1e-06 57.8 45 68.9
Lalb_Chr23g0269121 Lupinus albus HOM05D013197 ORTHO05D012811 3.1e-06 57.8 89 44.9
Nitab4.5_0002881g0010 Nicotiana tabacum HOM05D003021 ORTHO05D022173 3.1e-06 57.8 69 49.3
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 4.0e-06 57.4 45 68.9
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 4.0e-06 57.4 45 68.9
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 4.0e-06 57.4 45 68.9
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 4.0e-06 57.4 354 27.1
THA.LOC104802964 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 4.0e-06 57.4 71 43.7
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 4.0e-06 57.4 45 66.7
Lj7C750T8 Lonicera japonica HOM05D031498 ORTHO05D009846 5.3e-06 57.0 218 36.7
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 5.3e-06 57.0 47 63.8
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 5.3e-06 57.0 47 63.8
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 5.3e-06 57.0 46 65.2
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 6.9e-06 56.6 47 63.8
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 6.9e-06 56.6 47 63.8
Nitab4.5_0003145g0060 Nicotiana tabacum HOM05D003021 ORTHO05D002235 6.9e-06 56.6 47 61.7
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 6.9e-06 56.6 350 28.6
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 6.9e-06 56.6 47 63.8
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 6.9e-06 56.6 354 27.1
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 9.0e-06 56.2 47 63.8
BcaC06g32508 Brassica carinata HOM05D009040 ORTHO05D002235 9.0e-06 56.2 46 63.0
BcaC06g32509 Brassica carinata HOM05D009040 ORTHO05D002235 9.0e-06 56.2 46 63.0
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 9.0e-06 56.2 45 66.7
FvH4_5g14370 Fragaria vesca HOM05D003021 ORTHO05D002235 9.0e-06 56.2 47 63.8
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 9.0e-06 56.2 44 68.2
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 9.0e-06 56.2 44 68.2
Lj8P473T2 Lonicera japonica HOM05D031498 ORTHO05D016335 9.0e-06 56.2 78 44.9
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 9.0e-06 56.2 45 66.7
Peaxi162Scf00274g00005 Petunia axillaris HOM05D003021 ORTHO05D022173 9.0e-06 56.2 50 58.0
Thecc.09G007200 Theobroma cacao HOM05D019025 ORTHO05D009846 9.0e-06 56.2 87 43.7


User provided reference genes

Program Settings