Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.2e-113 412.5 241 100.0
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.1e-104 383.6 247 91.9
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 2.9e-81 305.8 251 76.5
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.1e-80 303.9 251 76.1
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.1e-80 303.9 251 72.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 4.0e-51 205.7 252 55.2
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 2.3e-46 189.9 254 46.9
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.5e-45 187.2 252 48.4
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 1.3e-44 184.1 255 48.2
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.2e-44 181.4 248 46.0
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.4e-43 180.6 254 44.9
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.4e-43 180.6 254 44.9
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.4e-43 180.6 263 47.1
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.4e-43 180.6 263 47.1
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.4e-43 180.6 258 46.1
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 3.1e-43 179.5 257 47.5
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.5e-42 177.2 254 47.6
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.0e-42 176.8 258 46.1
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 3.4e-42 176.0 261 46.7
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 3.4e-42 176.0 250 48.8
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 5.9e-42 175.3 250 47.2
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 2.2e-41 173.3 254 48.0
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.1e-40 171.0 250 51.2
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.1e-40 171.0 252 45.2
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.1e-40 171.0 274 47.4
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.4e-40 170.6 255 54.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.4e-40 170.6 248 44.4
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.4e-40 170.6 248 44.4
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.9e-40 170.2 260 45.8
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.9e-40 170.2 257 42.8
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 2.5e-40 169.9 259 45.6
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 5.5e-40 168.7 254 48.0
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 5.5e-40 168.7 253 46.2
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 7.2e-40 168.3 258 46.5
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 9.3e-40 167.9 255 42.0
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 9.3e-40 167.9 255 42.0
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.2e-39 167.5 254 42.1
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.2e-39 167.5 250 47.2
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.6e-39 167.2 255 41.2
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.6e-39 167.2 255 42.7
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.1e-39 166.8 255 40.8
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.1e-39 166.8 254 52.0
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.7e-39 166.4 252 50.4
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.0e-38 164.5 256 49.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.0e-38 164.5 235 43.4
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.0e-38 164.5 242 48.8
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 3.0e-38 162.9 261 42.9
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.7e-38 161.4 258 45.0
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 8.7e-38 161.4 264 42.8
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.1e-37 161.0 256 44.9
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.1e-37 161.0 256 44.9
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.5e-37 159.8 249 46.6
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.5e-37 159.8 256 47.3
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.3e-37 159.5 252 40.5
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 7.4e-37 158.3 249 45.4
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.2e-36 156.8 252 41.7
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 2.2e-36 156.8 257 44.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.8e-36 155.6 250 43.6
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 8.2e-36 154.8 248 43.5
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 8.2e-36 154.8 250 42.4
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 8.2e-36 154.8 237 46.0
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 8.2e-36 154.8 251 43.0
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 1.8e-35 153.7 252 38.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.8e-35 153.7 255 44.7
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 3.1e-35 152.9 250 44.8
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.1e-35 152.9 252 44.4
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 3.1e-35 152.9 255 43.5
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 9.0e-35 151.4 255 43.9
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.5e-34 150.6 237 39.2
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.6e-34 149.8 252 44.0
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.4e-34 149.4 237 45.1
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 3.4e-34 149.4 238 40.3
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 5.9e-34 148.7 256 50.0
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 5.9e-34 148.7 255 40.0
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.3e-33 147.5 260 38.8
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.7e-33 147.1 163 55.8
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.0e-33 145.6 247 44.1
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 6.5e-33 145.2 247 41.7
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.1e-32 144.4 251 40.6
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.5e-32 143.3 251 41.4
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 3.2e-32 142.9 249 44.2
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 7.2e-32 141.7 246 39.0
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 7.2e-32 141.7 254 36.6
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 3.6e-31 139.4 270 44.4
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 4.6e-31 139.0 249 40.2
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 6.1e-31 138.7 272 40.8
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 7.9e-31 138.3 250 44.8
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.4e-30 137.5 254 38.6
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.8e-30 137.1 251 40.6
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 2.3e-30 136.7 244 37.7
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.0e-30 136.3 235 39.1
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.1e-30 135.6 284 38.0
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 8.8e-30 134.8 242 37.6
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 8.8e-30 134.8 206 51.0
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.5e-29 134.0 249 39.8
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 3.1e-27 126.3 227 38.8
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.4e-26 122.9 249 35.3
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 5.9e-26 122.1 248 37.9
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 2.5e-24 116.7 245 33.9
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 4.2e-24 115.9 321 31.5
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.1e-23 113.6 265 42.6
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.1e-23 113.6 325 32.0
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 4.7e-23 112.5 247 36.8
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.4e-22 110.9 318 30.5
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.8e-22 110.5 251 37.5
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 6.7e-22 108.6 257 33.1
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.1e-21 107.8 241 36.9
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.6e-21 106.7 247 34.8
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 1.3e-20 104.4 252 31.7
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.2e-20 103.6 251 44.6
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 3.7e-20 102.8 244 31.6
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.1e-19 99.8 224 33.0
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.1e-19 99.8 224 33.0
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 7.0e-19 98.6 241 39.4
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 7.0e-19 98.6 241 39.4
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.2e-18 97.8 224 32.6
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.6e-18 97.4 255 31.8
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.0e-17 94.7 241 32.4
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.0e-17 94.7 241 32.4
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.0e-17 94.7 241 32.8
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.0e-17 94.7 244 31.6
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.7e-17 94.0 251 33.5
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.9e-17 93.2 253 34.0
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.9e-17 93.2 244 39.8
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 5.0e-17 92.4 228 33.3
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 5.0e-17 92.4 228 33.3
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 5.0e-17 92.4 228 33.3
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 5.0e-17 92.4 216 32.9
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 3.2e-16 89.7 226 32.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 3.2e-16 89.7 253 30.4
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.5e-16 89.0 119 43.7
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 7.2e-16 88.6 103 53.4
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.2e-15 87.8 217 32.3
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 1.2e-15 87.8 151 42.4
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.6e-15 87.4 225 31.1
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.0e-14 84.7 221 33.0
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.0e-14 82.8 161 38.5
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 5.2e-14 82.4 241 31.5
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 4.4e-13 79.3 253 31.2
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 7.5e-13 78.6 227 32.6
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 9.7e-13 78.2 251 29.5
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 2.8e-12 76.6 146 34.9
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.7e-12 76.3 119 47.9
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 2.4e-11 73.6 153 36.6
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.4e-11 73.6 139 32.4
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.6e-10 70.9 241 30.3
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 2.0e-10 70.5 247 33.2
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 2.7e-10 70.1 41 68.3
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.5e-08 63.5 37 67.6
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.6e-07 59.7 39 61.5


User provided reference genes

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