Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 7.3e-26 119.8 60 100.0
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.3e-14 82.4 43 90.7
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.7e-14 80.9 43 88.4
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.4e-13 79.0 42 85.7
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 4.1e-13 77.4 43 81.4
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 4.1e-13 77.4 43 79.1
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 4.1e-13 77.4 43 79.1
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 9.2e-13 76.3 40 87.5
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.2e-12 75.9 42 81.0
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 1.2e-12 75.9 42 81.0
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 1.6e-12 75.5 40 82.5
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 2.7e-12 74.7 42 81.0
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.7e-12 74.7 42 81.0
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.7e-12 74.7 43 76.7
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 2.7e-12 74.7 43 76.7
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 2.7e-12 74.7 42 78.6
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 3.5e-12 74.3 42 81.0
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 3.5e-12 74.3 42 81.0
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 3.5e-12 74.3 40 82.5
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 4.6e-12 73.9 42 78.6
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 4.6e-12 73.9 42 78.6
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 4.6e-12 73.9 42 78.6
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 4.6e-12 73.9 42 78.6
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 1.0e-11 72.8 43 76.7
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 1.0e-11 72.8 41 82.9
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 1.3e-11 72.4 39 84.6
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.3e-11 72.4 42 76.2
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.7e-11 72.0 39 82.1
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.7e-11 72.0 39 82.1
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 1.7e-11 72.0 39 82.1
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 2.3e-11 71.6 42 76.2
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 3.0e-11 71.2 40 80.0
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 3.0e-11 71.2 40 80.0
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 3.0e-11 71.2 43 74.4
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 3.9e-11 70.9 42 73.8
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 3.9e-11 70.9 40 82.5
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 3.9e-11 70.9 39 82.1
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 5.1e-11 70.5 42 73.8
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 5.1e-11 70.5 42 76.2
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 6.6e-11 70.1 42 76.2
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 6.6e-11 70.1 42 76.2
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 8.6e-11 69.7 44 72.7
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 8.6e-11 69.7 39 76.9
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 8.6e-11 69.7 43 69.8
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 1.1e-10 69.3 39 79.5
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.1e-10 69.3 42 71.4
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 1.5e-10 68.9 39 76.9
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.5e-10 68.9 43 74.4
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 1.5e-10 68.9 39 76.9
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 1.9e-10 68.6 40 72.5
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.9e-10 68.6 39 76.9
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.9e-10 68.6 39 76.9
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 1.9e-10 68.6 39 76.9
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 1.9e-10 68.6 40 77.5
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 1.9e-10 68.6 42 73.8
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 1.9e-10 68.6 40 77.5
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 2.5e-10 68.2 39 79.5
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 2.5e-10 68.2 39 76.9
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 2.5e-10 68.2 42 76.2
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.5e-10 68.2 43 65.1
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.5e-10 68.2 43 65.1
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 3.3e-10 67.8 39 79.5
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 3.3e-10 67.8 39 79.5
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 3.3e-10 67.8 39 79.5
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 3.3e-10 67.8 42 71.4
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 3.3e-10 67.8 39 79.5
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 3.3e-10 67.8 39 79.5
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 4.3e-10 67.4 42 71.4
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 4.3e-10 67.4 40 70.0
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 4.3e-10 67.4 42 71.4
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 5.6e-10 67.0 40 75.0
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 5.6e-10 67.0 42 71.4
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 5.6e-10 67.0 42 71.4
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 5.6e-10 67.0 39 74.4
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 5.6e-10 67.0 42 76.2
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 7.3e-10 66.6 40 77.5
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 9.5e-10 66.2 39 76.9
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 9.5e-10 66.2 39 76.9
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 1.6e-09 65.5 39 71.8
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.6e-09 65.5 54 61.1
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 1.6e-09 65.5 39 79.5
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 1.6e-09 65.5 39 74.4
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 2.1e-09 65.1 39 74.4
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 2.8e-09 64.7 39 74.4
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 2.8e-09 64.7 39 71.8
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 3.6e-09 64.3 42 66.7
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 6.2e-09 63.5 39 69.2
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 8.1e-09 63.2 42 66.7
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 1.1e-08 62.8 39 71.8
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 1.4e-08 62.4 39 71.8
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 2.3e-08 61.6 40 75.0
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 2.3e-08 61.6 40 75.0
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 2.3e-08 61.6 40 75.0
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 2.3e-08 61.6 40 75.0
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 4.0e-08 60.8 45 60.0
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.5e-07 58.9 38 63.2
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 2.0e-07 58.5 39 64.1
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.6e-07 58.2 42 59.5
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 2.9e-06 54.7 38 55.3


User provided reference genes

Program Settings