Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 0.0e+00 1198.0 789 100.0
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.1e-282 975.7 848 79.5
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 5.9e-200 701.8 849 64.1
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.4e-198 697.2 849 63.6
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 6.5e-183 645.2 825 54.3
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 3.1e-108 397.1 842 36.9
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.4e-89 335.1 899 31.9
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.2e-88 332.0 808 37.9
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.5e-86 325.1 807 32.6
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.6e-86 324.3 831 33.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.3e-86 323.9 829 33.8
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 8.2e-85 319.3 813 31.4
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 9.1e-84 315.8 796 31.5
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 2.0e-83 314.7 908 30.0
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 3.5e-83 313.9 841 34.6
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.9e-82 310.8 835 32.5
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 3.2e-81 307.4 811 32.6
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 7.2e-81 306.2 826 33.9
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 7.2e-81 306.2 213 76.5
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 2.1e-80 304.7 820 32.7
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.7e-80 304.3 818 32.2
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.4e-79 302.0 818 31.5
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.0e-78 298.1 730 34.1
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 4.4e-78 297.0 807 35.2
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 2.8e-77 294.3 815 31.0
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 3.1e-76 290.8 820 32.4
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 7.0e-76 289.7 808 31.3
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 7.0e-76 289.7 809 31.1
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 3.5e-75 287.3 813 32.2
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 7.7e-75 286.2 810 33.2
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 7.7e-75 286.2 800 34.2
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.9e-74 284.3 855 31.1
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.5e-74 283.1 845 31.7
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 8.5e-74 282.7 821 32.2
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.5e-73 282.0 828 29.8
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 5.5e-73 280.0 812 32.6
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 9.4e-73 279.3 796 36.9
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 9.4e-73 279.3 826 29.3
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.1e-72 276.6 843 32.6
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 6.1e-72 276.6 854 30.6
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 6.1e-72 276.6 870 29.7
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.0e-71 275.8 843 33.0
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.0e-71 275.8 848 31.5
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.8e-71 275.0 822 29.0
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 3.0e-71 274.2 806 38.1
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 4.0e-71 273.9 819 31.0
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 5.2e-71 273.5 795 30.3
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.6e-70 271.2 830 31.2
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 4.4e-70 270.4 808 38.5
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.7e-69 268.5 820 29.9
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.8e-69 267.7 795 35.5
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.8e-69 267.7 805 29.4
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.7e-69 267.3 821 30.8
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.7e-69 267.3 809 31.1
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.8e-69 266.9 792 30.6
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 4.8e-69 266.9 839 30.3
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 8.3e-69 266.2 440 43.6
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.1e-68 265.8 794 31.4
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.1e-68 265.8 437 44.9
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.4e-68 265.4 810 34.1
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.8e-68 265.0 869 35.4
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.4e-68 264.6 820 30.6
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 3.1e-68 264.2 856 29.0
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.1e-68 263.8 830 34.3
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 5.3e-68 263.5 814 36.6
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.6e-67 261.9 853 35.2
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.0e-67 261.5 842 33.5
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.7e-67 261.2 795 35.1
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.0e-66 259.2 826 29.8
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.3e-66 258.8 839 35.2
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 2.2e-66 258.1 829 29.9
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 2.2e-66 258.1 437 41.9
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 2.9e-66 257.7 792 32.3
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 5.0e-66 256.9 790 32.4
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 5.0e-66 256.9 438 44.1
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 8.5e-66 256.1 814 33.2
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.1e-65 255.8 1017 30.0
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.9e-65 255.0 800 32.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.5e-65 254.6 820 29.6
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.2e-64 252.3 870 29.3
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.6e-64 251.9 806 35.4
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 6.1e-64 250.0 845 31.5
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 6.8e-63 246.5 804 32.8
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.5e-62 245.4 851 29.3
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.2e-61 241.5 799 32.4
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 2.8e-61 241.1 800 31.9
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 8.3e-61 239.6 793 33.4
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 2.4e-60 238.0 846 30.3
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 4.1e-60 237.3 437 41.0
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 5.4e-60 236.9 806 28.2
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 9.1e-60 236.1 805 32.0
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.5e-59 234.2 811 31.6
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 4.5e-59 233.8 823 32.0
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.0e-58 232.6 832 28.2
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 8.6e-58 229.6 825 29.0
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.6e-56 225.3 815 27.2
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 4.0e-55 220.7 796 31.8
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 5.2e-55 220.3 475 37.3
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 2.0e-54 218.4 472 37.1
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 2.6e-54 218.0 847 28.2
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 4.4e-54 217.2 750 29.1
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 8.3e-53 213.0 845 29.0
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 4.1e-52 210.7 932 26.2
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 1.2e-51 209.1 544 35.3
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.9e-51 206.8 867 26.3
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-50 205.7 801 29.3
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 6.6e-50 203.4 852 28.3
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.9e-49 201.8 733 28.9
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.9e-49 201.8 526 31.6
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 7.3e-49 199.9 778 30.2
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-48 199.1 810 27.4
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.6e-48 198.7 798 26.7
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.6e-48 197.6 847 28.5
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 3.6e-48 197.6 807 27.4
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.0e-47 196.1 800 30.5
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 9.8e-46 189.5 741 30.2
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 2.2e-45 188.3 765 29.4
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 3.5e-43 181.0 800 27.6
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.7e-42 178.7 842 25.9
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 8.6e-42 176.4 698 34.0
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 8.6e-42 176.4 814 27.8
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 2.2e-37 161.8 114 72.8
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.7e-37 161.0 784 24.5
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 9.5e-33 146.4 387 31.3
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 6.2e-32 143.7 823 26.6
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.3e-31 141.7 892 23.5
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 7.6e-30 136.7 788 24.1
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.9e-30 136.3 802 24.4
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 9.9e-30 136.3 409 30.6
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 6.4e-29 133.7 174 44.8
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.4e-28 130.6 213 40.8
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.2e-27 129.4 792 29.3
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.6e-27 127.5 170 48.2
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 3.6e-24 117.9 820 22.3
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.2e-22 112.8 483 27.3
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.5e-22 112.5 93 59.1
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.7e-21 109.0 180 35.6
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 3.8e-21 107.8 168 44.6
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.9e-20 105.5 131 45.0
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 8.7e-18 96.7 167 33.5
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 3.3e-17 94.7 403 33.5
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.3e-17 94.7 403 33.5
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 3.4e-14 84.7 102 44.1
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.3e-13 82.8 118 40.7
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 2.9e-13 81.6 406 31.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.8e-13 81.3 180 36.7
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 8.4e-13 80.1 935 21.5
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.1e-12 79.7 201 33.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.9e-12 79.0 83 51.8
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 3.2e-12 78.2 328 27.4
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.1e-11 75.5 102 38.2
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 7.9e-11 73.6 102 40.2
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-10 72.4 95 44.2
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.1e-10 70.9 86 48.8
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 5.1e-10 70.9 61 54.1
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.9e-09 68.9 105 41.0
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.3e-09 68.2 105 41.0
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 5.6e-09 67.4 87 46.0
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 9.6e-09 66.6 107 35.5
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.6e-08 65.9 77 45.5
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 4.8e-08 64.3 525 20.6
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.8e-07 62.4 102 36.3
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 3.1e-07 61.6 404 27.5
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 4.0e-07 61.2 149 32.9
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 6.9e-07 60.5 107 34.6


User provided reference genes

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