Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 5.8e-115 417.5 208 100.0
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.2e-93 345.9 189 92.1
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 6.5e-82 307.8 212 75.5
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 7.0e-76 287.7 212 69.8
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 1.1e-68 263.8 212 63.7
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 6.6e-66 254.6 211 62.6
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 2.5e-65 252.7 211 62.6
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.7e-53 213.4 214 53.7
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 4.6e-51 205.3 214 51.4
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 5.2e-47 191.8 201 51.7
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 2.6e-38 162.9 210 40.5
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 7.5e-38 161.4 210 40.5
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 4.6e-35 152.1 206 41.7
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 5.6e-33 145.2 211 36.5
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 4.7e-32 142.1 210 38.1
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 1.3e-29 134.0 224 33.9
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.4e-28 130.6 207 36.7
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 1.4e-28 130.6 226 35.8
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 3.2e-28 129.4 211 32.7
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 5.4e-28 128.6 210 36.2
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 5.4e-28 128.6 215 35.3
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 9.2e-28 127.9 208 36.5
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.2e-28 127.9 216 35.6
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.2e-28 127.9 216 35.6
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 2.7e-27 126.3 213 36.6
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 4.6e-27 125.6 225 37.3
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 2.3e-26 123.2 216 34.7
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 2.3e-26 123.2 205 36.1
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 3.0e-26 122.9 204 35.3
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.1e-26 122.1 217 37.3
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 6.6e-26 121.7 228 36.0
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 2.5e-25 119.8 211 35.5
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 3.3e-25 119.4 215 32.6
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.3e-25 119.4 210 34.8
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 4.3e-25 119.0 213 36.6
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 2.1e-24 116.7 220 33.2
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 3.6e-24 115.9 220 36.4
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 2.4e-23 113.2 206 30.6
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 3.1e-23 112.8 206 30.1
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 4.0e-23 112.5 209 32.5
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 5.3e-23 112.1 211 34.1
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 6.9e-23 111.7 207 33.8
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 1.5e-22 110.5 210 34.8
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.6e-22 109.8 208 32.2
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 7.6e-22 108.2 200 38.0
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 9.9e-22 107.8 202 35.6
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 1.3e-21 107.5 201 35.3
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 6.4e-21 105.1 192 35.4
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 8.4e-21 104.8 208 30.8
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 1.1e-20 104.4 209 34.4
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.4e-20 103.2 208 30.8
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 4.2e-20 102.4 198 34.3
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 1.2e-19 100.9 235 31.1
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 7.8e-19 98.2 206 31.6
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 1.0e-18 97.8 196 31.6
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 1.0e-18 97.8 218 30.7
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 3.0e-18 96.3 213 32.4
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.9e-18 95.9 198 31.8
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.5e-17 94.0 221 30.8
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 2.5e-17 93.2 219 31.1
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 3.3e-17 92.8 199 32.7
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 5.6e-17 92.0 225 29.3
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 5.6e-17 92.0 225 29.3
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.6e-17 92.0 219 28.8
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 5.6e-17 92.0 145 31.7
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 5.6e-17 92.0 216 31.9
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 7.3e-17 91.7 149 33.6
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 7.3e-17 91.7 149 33.6
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 9.6e-17 91.3 228 29.4
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 9.6e-17 91.3 228 29.4
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 9.6e-17 91.3 228 29.4
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 9.6e-17 91.3 230 32.2
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 1.3e-16 90.9 227 29.1
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 1.3e-16 90.9 227 29.1
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.6e-16 90.5 218 31.2
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 2.1e-16 90.1 225 28.0
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 2.1e-16 90.1 225 28.0
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 2.1e-16 90.1 205 30.2
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.1e-16 90.1 151 33.1
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 2.1e-16 90.1 187 29.4
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 3.6e-16 89.4 213 31.0
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.6e-16 89.4 218 31.7
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 4.8e-16 89.0 214 29.9
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 6.2e-16 88.6 216 30.6
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 6.2e-16 88.6 216 30.6
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 8.1e-16 88.2 221 29.4
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 1.4e-15 87.4 228 29.4
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.4e-15 87.4 216 30.1
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.4e-15 87.4 218 31.2
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 1.8e-15 87.0 137 35.8
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 1.8e-15 87.0 147 35.4
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 1.8e-15 87.0 212 30.7
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.8e-15 87.0 218 28.0
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 4.0e-15 85.9 151 31.1
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 4.0e-15 85.9 186 30.6
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 1.2e-14 84.3 201 28.4
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 2.0e-14 83.6 147 33.3
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 2.0e-14 83.6 162 32.1
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 2.6e-14 83.2 228 28.1
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 2.6e-14 83.2 132 34.8
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.6e-14 83.2 144 40.3
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 3.4e-14 82.8 131 33.6
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 9.9e-14 81.3 221 29.9
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.7e-13 80.5 226 27.9
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 2.2e-13 80.1 206 24.8
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 4.9e-13 79.0 224 30.4
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 1.9e-12 77.0 198 28.3
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 1.9e-12 77.0 203 28.1
CSS0025872 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 2.4e-12 76.6 144 28.5
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 4.2e-12 75.9 225 27.6
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.2e-12 75.9 227 27.8
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 5.4e-12 75.5 207 30.9
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 9.3e-12 74.7 226 27.4
CiPaw.01G224800 Carya illinoinensis HOM05D002137 ORTHO05D002144 1.2e-11 74.3 144 30.6
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.6e-11 73.9 220 28.6
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 1.6e-11 73.9 217 24.4
Thecc.06G113200 Theobroma cacao HOM05D002137 ORTHO05D002144 2.7e-11 73.2 144 29.9
Duzib192G0186 Durio zibethinus HOM05D002137 ORTHO05D002144 7.9e-11 71.6 144 28.5
PGSC0003DMG400002586 Solanum tuberosum HOM05D002137 ORTHO05D002144 1.8e-10 70.5 147 26.5
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 3.9e-10 69.3 179 28.5
SalBow6G2279 Salvia bowleyana HOM05D002137 ORTHO05D002144 5.1e-10 68.9 147 27.2
SalBow6G5101 Salvia bowleyana HOM05D002137 ORTHO05D002144 5.1e-10 68.9 147 27.2
ClCG07G013740 Citrullus lanatus HOM05D002137 ORTHO05D002144 6.7e-10 68.6 140 27.9
Psat5g273120 Pisum sativum HOM05D002137 ORTHO05D002144 6.7e-10 68.6 147 28.6
CAN.G1389.23 Capsicum annuum HOM05D002137 ORTHO05D002144 8.7e-10 68.2 144 25.7
Haze_15956 Corylus avellana HOM05D002137 ORTHO05D002144 1.5e-09 67.4 144 28.5
Duzib235G1395 Durio zibethinus HOM05D002137 ORTHO05D002144 1.9e-09 67.0 118 29.7
Psat5g290120 Pisum sativum HOM05D002137 ORTHO05D002144 1.9e-09 67.0 147 28.6
TPR.G6537 Trifolium pratense HOM05D002137 ORTHO05D002144 1.9e-09 67.0 144 29.9
Nitab4.5_0000738g0100 Nicotiana tabacum HOM05D002137 ORTHO05D002144 2.5e-09 66.6 146 30.1
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 2.5e-09 66.6 218 27.1
unitig_32.g11575 Utricularia gibba HOM05D002137 ORTHO05D002144 2.5e-09 66.6 197 26.9
Cfa003583 Carpinus fangiana HOM05D002137 ORTHO05D002144 3.3e-09 66.2 144 27.8
Gohir.D10G060200 Gossypium hirsutum HOM05D002137 ORTHO05D002144 3.3e-09 66.2 145 28.3
Gorai.011G064400 Gossypium raimondii HOM05D002137 ORTHO05D002144 3.3e-09 66.2 145 28.3
Sopen03g040430 Solanum pennellii HOM05D002137 ORTHO05D002144 5.6e-09 65.5 147 25.2
MSTRG.4769 Avicennia marina HOM05D002137 ORTHO05D002144 1.3e-08 64.3 140 26.4
HanXRQChr10g0312971 Helianthus annuus HOM05D002137 ORTHO05D002144 1.3e-08 64.3 144 28.5
Peaxi162Scf00038g00154 Petunia axillaris HOM05D002137 ORTHO05D002144 1.3e-08 64.3 141 27.7
Psat0s734g0080 Pisum sativum HOM05D002137 ORTHO05D002144 1.3e-08 64.3 147 27.9
Oeu026755.1 Olea europaea HOM05D002137 ORTHO05D002144 1.6e-08 63.9 129 26.4
Nitab4.5_0010788g0030 Nicotiana tabacum HOM05D002137 ORTHO05D002144 2.1e-08 63.5 147 25.9
ECA234G3777 Erigeron canadensis HOM05D002137 ORTHO05D002144 2.8e-08 63.2 144 25.7
Nitab4.5_0001295g0090 Nicotiana tabacum HOM05D002137 ORTHO05D002144 2.8e-08 63.2 147 25.9
Oeu035884.1 Olea europaea HOM05D002137 ORTHO05D002144 2.8e-08 63.2 162 27.8
Oeu048806.1 Olea europaea HOM05D000973 ORTHO05D000652 2.8e-08 63.2 160 24.4
Os02g0261000 Oryza sativa ssp. japonica HOM05D058753 ORTHO05D006123 2.8e-08 63.2 135 31.1
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 4.8e-08 62.4 214 26.6
Duzib160G0633 Durio zibethinus HOM05D002137 ORTHO05D002144 6.2e-08 62.0 145 26.9
Migut.I01027 Erythranthe guttata HOM05D002137 ORTHO05D002144 1.4e-07 60.8 162 25.9
TWI34G1454 Tripterygium wilfordii HOM05D002137 ORTHO05D002144 1.4e-07 60.8 148 28.4
Prupe.3G049400 Prunus persica HOM05D002137 ORTHO05D002144 1.8e-07 60.5 144 26.4
Rhsim08G0233700 Rhododendron simsii HOM05D002137 ORTHO05D002144 1.8e-07 60.5 144 26.4
TWI63G0827 Tripterygium wilfordii HOM05D002137 ORTHO05D002144 1.8e-07 60.5 149 28.2
TWI79G1297 Tripterygium wilfordii HOM05D002137 ORTHO05D002144 1.8e-07 60.5 136 25.7
Actinidia26072 Actinidia chinensis HOM05D002137 ORTHO05D002144 2.4e-07 60.1 146 26.0
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 2.4e-07 60.1 74 37.8
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 3.1e-07 59.7 209 27.8
HanXRQChr12g0360521 Helianthus annuus HOM05D002137 ORTHO05D002144 3.1e-07 59.7 132 29.5
Psat3g154840 Pisum sativum HOM05D002137 ORTHO05D002144 3.1e-07 59.7 144 27.1
Lsat_1_v5_gn_5_135261 Lactuca sativa HOM05D002137 ORTHO05D002144 4.0e-07 59.3 144 25.0
unitig_748.g7459 Utricularia gibba HOM05D002137 ORTHO05D002144 6.9e-07 58.5 144 26.4
unitig_26.g8929 Utricularia gibba HOM05D002137 ORTHO05D002144 9.0e-07 58.2 143 26.6
unitig_0.g2874 Utricularia gibba HOM05D002137 ORTHO05D002144 1.5e-06 57.4 144 28.5
Sabra12G0109300 Salix brachista HOM05D000973 ORTHO05D000652 4.5e-06 55.8 159 26.4
Cc04_g01920 Coffea canephora HOM05D002137 ORTHO05D002144 5.8e-06 55.5 145 24.1
MBI04_g31164_MAGBIO Magnolia biondii HOM05D002137 ORTHO05D002144 9.9e-06 54.7 201 24.4
Manes.13G148700 Manihot esculenta HOM05D000973 ORTHO05D000652 9.9e-06 54.7 158 21.5


User provided reference genes

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