Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000502g0170 Nicotiana tabacum HOM05D000023 ORTHO05D002750 1.4e-63 246.1 126 100.0
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 5.2e-26 121.3 66 81.8
Nitab4.5_0002586g0050 Nicotiana tabacum HOM05D000023 ORTHO05D002750 4.0e-18 95.1 74 51.4
CSS0005925 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.7e-16 89.7 74 48.6
CSS0049915 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 2.1e-14 82.8 73 46.6
Sed0008376 Sechium edule HOM05D000023 ORTHO05D000014 2.7e-14 82.4 74 45.9
Nn2g14678 Nelumbo nucifera HOM05D000023 ORTHO05D000014 3.9e-13 78.6 71 46.5
QL02p096245 Quercus lobata HOM05D000023 ORTHO05D000014 3.9e-13 78.6 76 46.1
Nn1g01508 Nelumbo nucifera HOM05D000023 ORTHO05D012305 5.1e-13 78.2 71 47.9
PGSC0003DMG400044990 Solanum tuberosum HOM05D009083 ORTHO05D010901 8.7e-13 77.4 66 48.5
TWI63G1250 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.5e-12 76.6 80 46.2
Glyma.20G074600 Glycine max HOM05D000023 ORTHO05D000014 5.6e-12 74.7 73 45.2
Glyma.01G121600 Glycine max HOM05D000023 ORTHO05D000014 7.4e-12 74.3 73 45.2
Glyma.07G163900 Glycine max HOM05D000023 ORTHO05D000014 7.4e-12 74.3 73 45.2
Glyma.20G072800 Glycine max HOM05D000023 ORTHO05D000014 7.4e-12 74.3 73 45.2
Glyma.06G230700 Glycine max HOM05D000023 ORTHO05D000014 9.6e-12 73.9 73 45.2
Glyma.12G152900 Glycine max HOM05D000023 ORTHO05D000014 9.6e-12 73.9 73 45.2
Glyma.13G192700 Glycine max HOM05D000023 ORTHO05D000014 9.6e-12 73.9 73 45.2
SHI03890 Sapria himalayana HOM05D000023 ORTHO05D000014 9.6e-12 73.9 68 44.1
MSTRG.23368 Avicennia marina HOM05D000023 ORTHO05D000014 1.3e-11 73.6 68 47.1
Glyma.17G215100 Glycine max HOM05D000023 ORTHO05D000014 1.3e-11 73.6 78 42.3
Sopen07g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-11 73.6 65 46.2
Glyma.09G064900 Glycine max HOM05D000023 ORTHO05D000014 1.6e-11 73.2 73 45.2
Glyma.10G121900 Glycine max HOM05D000023 ORTHO05D000014 2.1e-11 72.8 73 45.2
Glyma.09G104100 Glycine max HOM05D000023 ORTHO05D000014 2.8e-11 72.4 73 42.5
Glyma.19G102600 Glycine max HOM05D000023 ORTHO05D000014 6.2e-11 71.2 74 44.6
QL11p007092 Quercus lobata HOM05D000412 ORTHO05D000429 6.2e-11 71.2 76 44.7
HanXRQChr07g0186221 Helianthus annuus HOM05D000023 ORTHO05D000014 8.1e-11 70.9 66 47.0
Glyma.04G163700 Glycine max HOM05D000023 ORTHO05D000014 1.1e-10 70.5 76 42.1
Glyma.15G205800 Glycine max HOM05D000023 ORTHO05D000014 1.1e-10 70.5 73 41.1
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.4e-10 70.1 68 38.2
SHI21514 Sapria himalayana HOM05D000023 ORTHO05D000014 1.4e-10 70.1 85 36.5
Atru.chr6.1476 Acer truncatum HOM05D000023 ORTHO05D002750 1.8e-10 69.7 70 45.7
EL10Ac8g19642 Beta vulgaris HOM05D000023 ORTHO05D000014 2.4e-10 69.3 70 45.7
Sopen10g005310 Solanum pennellii HOM05D000023 ORTHO05D000014 2.4e-10 69.3 74 41.9
Sopen10g007400 Solanum pennellii HOM05D000023 ORTHO05D000014 2.4e-10 69.3 74 41.9
Atru.chr9.374 Acer truncatum HOM05D000023 ORTHO05D000014 4.0e-10 68.6 71 45.1
Sopen01g050040 Solanum pennellii HOM05D000023 ORTHO05D000014 5.3e-10 68.2 74 41.9
Glyma.02G159600 Glycine max HOM05D000023 ORTHO05D000014 6.9e-10 67.8 66 45.5
Glyma.08G294500 Glycine max HOM05D000023 ORTHO05D000014 9.0e-10 67.4 70 42.9
EL10Ac4g08499 Beta vulgaris HOM05D000023 ORTHO05D000014 2.6e-09 65.9 70 42.9
Glyma.18G099100 Glycine max HOM05D000023 ORTHO05D000014 2.6e-09 65.9 63 46.0
Sopen01g010490 Solanum pennellii HOM05D000023 ORTHO05D000014 2.6e-09 65.9 74 40.5
Glyma.09G000200 Glycine max HOM05D000023 ORTHO05D000014 3.4e-09 65.5 73 42.5
QL10p011117 Quercus lobata HOM05D000023 ORTHO05D000014 3.4e-09 65.5 57 45.6
SGA_v2.0_scaffold17G08089 Striga asiatica HOM05D000023 ORTHO05D000014 3.4e-09 65.5 71 42.3
SGA_v2.0_scaffold327G48774 Striga asiatica HOM05D000023 ORTHO05D000014 3.4e-09 65.5 74 41.9
BcaC01g00960 Brassica carinata HOM05D000023 ORTHO05D000014 5.8e-09 64.7 76 40.8
Glyma.14G162700 Glycine max HOM05D000023 ORTHO05D000014 5.8e-09 64.7 62 45.2
PSO170G4702 Papaver somniferum HOM05D000023 ORTHO05D000014 5.8e-09 64.7 73 41.1
Glyma.14G109500 Glycine max HOM05D000023 ORTHO05D013849 7.6e-09 64.3 75 40.0
MELO3C022886.2 Cucumis melo HOM05D000023 ORTHO05D002750 1.3e-08 63.5 48 52.1
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 1.3e-08 63.5 63 36.5
SHI30372 Sapria himalayana HOM05D000023 ORTHO05D000014 1.3e-08 63.5 66 36.4
THA.LOC104820419 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 1.3e-08 63.5 67 38.8
Zm00001eb220690 Zea mays HOM05D000023 ORTHO05D000014 2.2e-08 62.8 68 42.6
Lj1P964T40 Lonicera japonica HOM05D000023 ORTHO05D002750 4.9e-08 61.6 72 41.7
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 4.9e-08 61.6 61 37.7
Hund15138 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.9e-08 61.6 73 38.4
HanXRQChr13g0409081 Helianthus annuus HOM05D000023 ORTHO05D000014 6.4e-08 61.2 130 32.3
Lj2P953T31 Lonicera japonica HOM05D000023 ORTHO05D002750 6.4e-08 61.2 71 42.3
Lj4P619T3 Lonicera japonica HOM05D000023 ORTHO05D002750 8.4e-08 60.8 71 42.3
Lj8P561T28 Lonicera japonica HOM05D000023 ORTHO05D002750 8.4e-08 60.8 71 42.3
Hund22686 Selenicereus undatus HOM05D000023 ORTHO05D000014 8.4e-08 60.8 66 40.9
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.1e-07 60.5 69 40.6
ECA236G3681 Erigeron canadensis HOM05D011018 ORTHO05D010901 1.1e-07 60.5 60 45.0
Nn1g09269 Nelumbo nucifera HOM05D000023 ORTHO05D000014 1.1e-07 60.5 73 42.5
Hund24914 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.1e-07 60.5 66 40.9
Hma1.2p1_0490F.1_g164210 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.4e-07 60.1 68 38.2
Glyma.04G117600 Glycine max HOM05D000023 ORTHO05D000014 1.9e-07 59.7 59 47.5
Hma1.2p1_2277F.1_g318670 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.9e-07 59.7 68 38.2
Lj8P655T9 Lonicera japonica HOM05D000023 ORTHO05D002750 1.9e-07 59.7 71 39.4
Lj9P526T21 Lonicera japonica HOM05D000023 ORTHO05D002750 1.9e-07 59.7 71 40.8
Lj4g0005907 Lotus japonicus HOM05D000023 ORTHO05D000014 1.9e-07 59.7 68 38.2
Lj5g0017561 Lotus japonicus HOM05D000023 ORTHO05D000014 1.9e-07 59.7 68 38.2
Zm00001eb221320 Zea mays HOM05D036183 ORTHO05D010901 1.9e-07 59.7 67 40.3
Nn2g14207 Nelumbo nucifera HOM05D048985 ORTHO05D010901 2.4e-07 59.3 66 42.4
Hund00488 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund04194 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund05820 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund10386 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund15093 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund22984 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund23411 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund23957 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund25526 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund26626 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund30522 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Hund31071 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-07 59.3 66 39.4
Glyma.03G080400 Glycine max HOM05D000023 ORTHO05D000014 3.2e-07 58.9 49 53.1
Glyma.07G171900 Glycine max HOM05D000023 ORTHO05D000014 3.2e-07 58.9 69 40.6
Glyma.19G103700 Glycine max HOM05D000023 ORTHO05D000014 3.2e-07 58.9 69 40.6
Hund06285 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.2e-07 58.9 66 39.4
Hund20085 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.2e-07 58.9 66 39.4
Lj2P908T13 Lonicera japonica HOM05D000023 ORTHO05D002750 4.2e-07 58.5 72 44.4
Lj8P661T5 Lonicera japonica HOM05D000023 ORTHO05D002750 4.2e-07 58.5 71 39.4
Hund13497 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.2e-07 58.5 66 39.4
SGA_v2.0_scaffold5G02852 Striga asiatica HOM05D000023 ORTHO05D000014 4.2e-07 58.5 67 37.3
AL7G46890 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 5.5e-07 58.2 55 43.6
Lj1P332T15 Lonicera japonica HOM05D000023 ORTHO05D000014 5.5e-07 58.2 71 39.4
Lj6P498T15 Lonicera japonica HOM05D000023 ORTHO05D002750 5.5e-07 58.2 71 39.4
Hund11626 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.5e-07 58.2 66 37.9
Hund18176 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.5e-07 58.2 66 39.4
Aqoxy5G01955 Aquilegia oxysepala HOM05D009083 ORTHO05D010901 7.1e-07 57.8 71 36.6
arahy.Tifrunner.gnm1.ann1.0X5JTE Arachis hypogaea HOM05D000023 ORTHO05D012305 7.1e-07 57.8 75 41.3
Glyma.16G099000 Glycine max HOM05D000023 ORTHO05D000014 7.1e-07 57.8 69 36.2
Lj4P405T3 Lonicera japonica HOM05D000023 ORTHO05D000014 7.1e-07 57.8 72 40.3
Hund12079 Selenicereus undatus HOM05D000023 ORTHO05D000014 7.1e-07 57.8 66 37.9
BcaB08g36197 Brassica carinata HOM05D000023 ORTHO05D000014 9.3e-07 57.4 58 46.6
Lj9C56T3 Lonicera japonica HOM05D000023 ORTHO05D002750 9.3e-07 57.4 71 39.4
Hund31325 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.3e-07 57.4 58 39.7
arahy.Tifrunner.gnm1.ann1.RSM4DQ Arachis hypogaea HOM05D000023 ORTHO05D000014 1.2e-06 57.0 74 37.8
arahy.Tifrunner.gnm1.ann1.W00QRJ Arachis hypogaea HOM05D000023 ORTHO05D000014 1.2e-06 57.0 74 37.8
BolC9t53194H Brassica oleracea HOM05D000023 ORTHO05D000014 1.2e-06 57.0 67 41.8
BraA06t27742Z Brassica rapa HOM05D000023 ORTHO05D000014 1.2e-06 57.0 67 41.8
Lj1g0009383 Lotus japonicus HOM05D000023 ORTHO05D002750 1.2e-06 57.0 70 41.4
PGR031G0470 Punica granatum HOM05D000023 ORTHO05D000014 1.2e-06 57.0 63 44.4
PGR102G1141 Punica granatum HOM05D000023 ORTHO05D000014 1.2e-06 57.0 63 42.9
Lj2P444T7 Lonicera japonica HOM05D000023 ORTHO05D002750 1.6e-06 56.6 71 38.0
Hund14805 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.6e-06 56.6 66 37.9
Hund20418 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.6e-06 56.6 76 40.8
A09p32160 Brassica napus HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 42.6
BraA09t38762Z Brassica rapa HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 42.6
Os01g0379800 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 41.2
Os05g0232800 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 41.2
Os05g0256350 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 41.2
Os10g0549900 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 41.2
Os12g0537000 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 41.2
Os12g0538000 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 41.2
Os12g0538066 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 41.2
PGR142G0273 Punica granatum HOM05D000023 ORTHO05D000014 2.1e-06 56.2 61 42.6
arahy.Tifrunner.gnm1.ann1.YG44LD Arachis hypogaea HOM05D000023 ORTHO05D000014 2.7e-06 55.8 74 40.5
Thhalv10012187m.g Eutrema salsugineum HOM05D026077 ORTHO05D032958 2.7e-06 55.8 67 41.8
SHI26731 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-06 55.8 67 32.8
Hund04838 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.7e-06 55.8 66 37.9
Hund10515 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.7e-06 55.8 66 37.9
Hund18264 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.7e-06 55.8 66 37.9
Zm00001eb201160 Zea mays HOM05D000023 ORTHO05D010901 2.7e-06 55.8 66 40.9
arahy.Tifrunner.gnm1.ann1.WBP0IL Arachis hypogaea HOM05D000023 ORTHO05D012305 3.5e-06 55.5 74 40.5
Lj1g0014944 Lotus japonicus HOM05D000023 ORTHO05D000014 3.5e-06 55.5 68 35.3
Os01g0722550 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 3.5e-06 55.5 68 41.2
Hund11026 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.5e-06 55.5 66 37.9
CSS0017113 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 4.6e-06 55.1 40 57.5
SHI36418 Sapria himalayana HOM05D000023 ORTHO05D000014 4.6e-06 55.1 45 46.7
Hund01251 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.6e-06 55.1 66 37.9
Hund04191 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.6e-06 55.1 66 36.4
PGR044G1170 Punica granatum HOM05D000023 ORTHO05D000014 6.0e-06 54.7 61 42.6
Ca_14048_v3 Cicer arietinum L. HOM05D000023 ORTHO05D000014 7.9e-06 54.3 70 34.3
PGR004G2136 Punica granatum HOM05D000023 ORTHO05D000014 7.9e-06 54.3 63 42.9
PGR042G3428 Punica granatum HOM05D000023 ORTHO05D000014 7.9e-06 54.3 63 42.9


User provided reference genes

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