Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.8e-180 634.8 335 100.0
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 6.4e-172 607.4 335 96.4
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.6e-170 601.3 332 95.8
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 7.6e-165 583.9 335 92.5
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 8.4e-164 580.5 335 91.9
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.1e-163 580.1 335 91.9
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.4e-163 579.7 335 91.3
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 3.4e-141 505.4 328 81.7
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 2.5e-136 489.2 313 80.5
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.5e-131 472.6 310 81.0
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 3.2e-131 472.2 314 79.9
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.6e-130 469.9 312 80.1
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 7.9e-130 467.6 314 78.7
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.4e-129 466.8 310 79.7
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 2.0e-125 453.0 311 76.2
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 2.6e-125 452.6 305 77.4
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.6e-125 452.6 302 79.5
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 4.5e-125 451.8 307 79.2
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.3e-124 450.3 302 79.1
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.3e-124 450.3 304 77.6
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.7e-124 449.9 312 77.9
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 3.8e-124 448.7 299 80.3
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 6.5e-124 448.0 302 79.1
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 8.5e-124 447.6 305 76.7
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.1e-123 447.2 305 76.7
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 1.9e-123 446.4 321 75.1
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 2.5e-123 446.0 308 77.9
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 3.2e-123 445.7 307 77.5
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 3.2e-123 445.7 301 78.7
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 9.4e-123 444.1 307 76.9
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 9.4e-123 444.1 307 78.2
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 1.6e-122 443.4 305 77.4
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.6e-122 443.4 307 77.5
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 3.6e-122 442.2 309 78.3
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 3.6e-122 442.2 313 75.1
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.1e-120 437.2 310 76.1
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.5e-120 436.8 305 76.1
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.5e-120 436.8 307 75.9
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 5.7e-120 434.9 307 75.6
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.3e-119 433.7 307 75.2
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 2.2e-119 433.0 302 77.2
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 2.8e-119 432.6 302 77.2
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 6.3e-119 431.4 298 77.2
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.4e-118 430.3 315 74.6
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.4e-118 430.3 298 74.8
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 7.0e-118 427.9 307 75.2
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 7.0e-118 427.9 307 75.2
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.2e-117 427.2 299 76.3
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.2e-117 427.2 305 74.1
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.6e-117 426.8 307 75.6
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 2.0e-117 426.4 309 74.8
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 2.6e-117 426.0 307 74.9
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 7.7e-117 424.5 305 74.1
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.0e-116 424.1 302 74.5
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.2e-116 422.9 331 70.7
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 3.8e-116 422.2 305 74.1
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.0e-116 421.8 322 71.4
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.1e-115 420.6 311 72.3
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.2e-114 417.2 311 72.0
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 3.0e-113 412.5 298 75.5
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 5.7e-112 408.3 302 72.8
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.2e-111 406.4 300 74.0
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 3.7e-111 405.6 298 71.5
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 4.1e-110 402.1 307 71.7
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 7.0e-110 401.4 300 72.3
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 7.0e-110 401.4 306 73.9
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 1.2e-109 400.6 303 70.6
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 2.0e-109 399.8 298 70.5
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 2.0e-109 399.8 298 72.1
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 4.5e-109 398.7 298 71.1
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 4.5e-109 398.7 311 71.4
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 5.9e-109 398.3 302 71.9
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 2.9e-108 396.0 298 71.8
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 3.8e-108 395.6 303 69.3
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.5e-107 393.7 305 69.2
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.5e-107 393.7 303 70.3
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.9e-107 393.3 305 71.5
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.9e-107 393.3 323 67.5
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 3.2e-107 392.5 298 70.1
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.2e-107 392.1 305 69.5
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 5.5e-107 391.7 311 68.2
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.6e-106 390.2 291 72.2
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.7e-106 389.4 304 69.4
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.7e-106 389.4 304 69.4
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 3.6e-106 389.0 298 70.1
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 4.7e-106 388.7 318 67.6
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 6.1e-106 388.3 304 69.4
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 8.0e-106 387.9 316 67.7
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.4e-105 387.1 298 69.8
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.4e-105 387.1 303 68.6
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.4e-105 387.1 298 71.1
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 1.8e-105 386.7 298 70.5
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 5.2e-105 385.2 307 69.1
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.2e-104 384.0 312 67.6
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.5e-104 383.6 300 70.0
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 4.4e-104 382.1 296 69.9
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 5.7e-104 381.7 306 67.6
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 7.5e-104 381.3 299 68.9
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.3e-103 380.6 325 65.8
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.7e-103 380.2 323 65.9
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 4.8e-103 378.6 298 68.5
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.3e-103 378.3 314 67.5
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 2.4e-102 376.3 308 66.9
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 5.4e-102 375.2 298 68.8
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 7.0e-102 374.8 246 78.9
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-101 374.0 304 68.1
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 2.7e-101 372.9 305 66.6
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 2.7e-101 372.9 305 66.9
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 3.5e-101 372.5 305 66.2
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 3.5e-101 372.5 297 67.7
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.9e-99 366.7 290 70.3
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 2.1e-98 363.2 240 79.2
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 6.1e-98 361.7 297 67.0
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 6.1e-98 361.7 297 67.3
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 8.0e-98 361.3 295 68.8
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 4.1e-94 349.0 310 63.2
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.6e-91 338.6 319 61.4
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.3e-87 327.4 305 61.3
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 8.0e-82 308.1 218 73.9
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.3e-68 264.2 299 53.8
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 5.1e-68 262.3 299 53.2
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 6.4e-63 245.4 214 62.6
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.1e-62 244.6 239 58.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 2.7e-61 240.0 301 48.8
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 3.5e-61 239.6 217 62.2
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 3.3e-59 233.0 296 50.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 8.1e-58 228.4 202 65.3
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 1.4e-57 227.6 301 46.2
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 2.3e-52 210.3 325 42.5
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.5e-51 207.6 321 46.1
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.1e-49 201.4 265 49.4
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 4.9e-47 192.6 294 41.8
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.4e-46 190.3 126 77.8
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.7e-45 186.8 126 76.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.4e-38 164.5 299 37.5
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.6e-35 152.5 306 37.6
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.4e-33 147.1 129 62.0
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 1.2e-32 144.8 94 78.7
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 5.8e-32 142.5 227 42.3
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.1e-30 138.3 205 43.4
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.5e-30 137.1 101 70.3
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 7.1e-30 135.6 129 59.7
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.0e-23 115.2 76 76.3
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 9.4e-22 108.6 111 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.2e-21 108.2 174 46.0
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.6e-21 107.8 162 44.4
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.6e-21 107.8 162 44.4
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.6e-21 107.8 162 44.4
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.8e-20 104.4 70 77.1
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 3.0e-20 103.6 70 75.7
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 5.1e-20 102.8 59 86.4
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 1.5e-19 101.3 164 41.5
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 4.8e-18 96.3 63 79.4
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 1.7e-15 87.8 82 62.2
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 2.9e-15 87.0 76 59.2
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.9e-14 84.3 103 50.5
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 2.4e-09 67.4 40 82.5
Nitab4.5_0002610g0020 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.1e-09 66.6 73 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.3e-07 61.6 59 61.0


User provided reference genes

Program Settings