Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000497g0210 Nicotiana tabacum HOM05D018776 ORTHO05D286177 0.0e+00 1317.0 665 100.0
Nitab4.5_0005747g0010 Nicotiana tabacum HOM05D018776 ORTHO05D286306 5.0e-152 542.3 292 93.2
Nitab4.5_0006168g0030 Nicotiana tabacum HOM05D000460 ORTHO05D000333 1.3e-144 517.7 649 50.2
Nitab4.5_0003695g0020 Nicotiana tabacum HOM05D018776 ORTHO05D285183 1.8e-109 401.0 223 91.9
Nitab4.5_0000451g0010 Nicotiana tabacum HOM05D018776 ORTHO05D283391 3.4e-108 396.7 255 80.8
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 4.7e-49 200.3 242 52.5
Nitab4.5_0002613g0080 Nicotiana tabacum HOM05D018776 ORTHO05D285081 7.3e-26 123.2 137 49.6
Nitab4.5_0000497g0220 Nicotiana tabacum HOM05D018776 ORTHO05D286405 3.9e-19 100.9 195 37.9
Nitab4.5_0000168g0170 Nicotiana tabacum HOM05D018776 ORTHO05D285052 1.6e-17 95.5 133 43.6
Peaxi162Scf00959g00022 Petunia axillaris HOM05D003566 ORTHO05D005288 1.7e-11 75.5 86 48.8
Sopen05g029450 Solanum pennellii HOM05D003566 ORTHO05D005288 3.3e-10 71.2 86 47.7
PGSC0003DMG400007018 Solanum tuberosum HOM05D003566 ORTHO05D005288 4.3e-10 70.9 86 46.5
Solyc05g050980.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 7.3e-10 70.1 86 46.5
TAR374G0275 Trochodendron aralioides HOM05D003566 ORTHO05D005288 2.1e-09 68.6 86 45.3
Nitab4.5_0003912g0050 Nicotiana tabacum HOM05D003566 ORTHO05D005288 2.8e-09 68.2 86 46.5
Solyc01g091190.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 3.6e-09 67.8 86 46.5
Sopen01g036940 Solanum pennellii HOM05D003566 ORTHO05D005288 3.6e-09 67.8 86 46.5
PGSC0003DMG400026006 Solanum tuberosum HOM05D003566 ORTHO05D005288 3.6e-09 67.8 86 46.5
Nitab4.5_0005272g0040 Nicotiana tabacum HOM05D003566 ORTHO05D005288 4.7e-09 67.4 86 45.3
SGA_v2.0_scaffold95G28906 Striga asiatica HOM05D003566 ORTHO05D005288 6.2e-09 67.0 87 42.5
Lj9A568G56 Lonicera japonica HOM05D003566 ORTHO05D005288 1.1e-08 66.2 87 43.7
Peaxi162Scf00013g03114 Petunia axillaris HOM05D003566 ORTHO05D005288 1.1e-08 66.2 86 45.3
Actinidia12250 Actinidia chinensis HOM05D003566 ORTHO05D005288 3.1e-08 64.7 87 43.7
Nitab4.5_0000457g0110 Nicotiana tabacum HOM05D003566 ORTHO05D005288 3.1e-08 64.7 86 45.3
SGA_v2.0_scaffold153G36998 Striga asiatica HOM05D003566 ORTHO05D005288 3.1e-08 64.7 87 41.4
DCAR_008553 Daucus carota HOM05D003566 ORTHO05D005288 4.0e-08 64.3 87 42.5
Cc02_g24040 Coffea canephora HOM05D003566 ORTHO05D005288 5.2e-08 63.9 87 44.8
MBI04_g40966_MAGBIO Magnolia biondii HOM05D003566 ORTHO05D018971 5.2e-08 63.9 86 43.0
QL08p052721 Quercus lobata HOM05D003566 ORTHO05D005288 6.8e-08 63.5 87 41.4
Cfa001747 Carpinus fangiana HOM05D003566 ORTHO05D005288 8.9e-08 63.2 87 41.4
Rhsim01G0149300 Rhododendron simsii HOM05D003566 ORTHO05D005288 8.9e-08 63.2 87 42.5
unitig_26.g8900 Utricularia gibba HOM05D003566 ORTHO05D005288 8.9e-08 63.2 99 38.4
unitig_749.g14378 Utricularia gibba HOM05D003566 ORTHO05D005288 8.9e-08 63.2 86 41.9
unitig_76.g29084 Utricularia gibba HOM05D003566 ORTHO05D005288 8.9e-08 63.2 86 41.9
Dinv43695 Davidia involucrata HOM05D003566 ORTHO05D005288 1.2e-07 62.8 87 41.4
Nitab4.5_0001329g0120 Nicotiana tabacum HOM05D003566 ORTHO05D005288 1.2e-07 62.8 103 42.7
CSS0046086 Camellia sinensis var. sinensis HOM05D003566 ORTHO05D005288 1.5e-07 62.4 87 40.2
QL08p052732 Quercus lobata HOM05D003566 ORTHO05D005288 1.5e-07 62.4 87 42.5
Actinidia12680 Actinidia chinensis HOM05D003566 ORTHO05D005288 2.6e-07 61.6 87 37.9
CAN.G388.31 Capsicum annuum HOM05D003566 ORTHO05D005288 2.6e-07 61.6 86 43.0
Lsat_1_v5_gn_4_43461 Lactuca sativa HOM05D003566 ORTHO05D005288 2.6e-07 61.6 87 41.4
Lsat_1_v5_gn_7_9680 Lactuca sativa HOM05D003566 ORTHO05D005288 2.6e-07 61.6 87 41.4
Manes.05G046900 Manihot esculenta HOM05D003566 ORTHO05D005288 2.6e-07 61.6 87 42.5
Rhsim07G0028700 Rhododendron simsii HOM05D003566 ORTHO05D005288 2.6e-07 61.6 87 42.5
vmacro21022 Vaccinium macrocarpon HOM05D003566 ORTHO05D005288 2.6e-07 61.6 87 41.4
HanXRQChr04g0122731 Helianthus annuus HOM05D003566 ORTHO05D005288 3.4e-07 61.2 87 41.4
CiPaw.01G263300 Carya illinoinensis HOM05D003566 ORTHO05D005288 5.8e-07 60.5 87 39.1
Sabra02G0114000 Salix brachista HOM05D003566 ORTHO05D005288 7.6e-07 60.1 87 41.4
ECA234G2985 Erigeron canadensis HOM05D003566 ORTHO05D005288 9.9e-07 59.7 84 41.7
Lalb_Chr12g0208181 Lupinus albus HOM05D003566 ORTHO05D005288 9.9e-07 59.7 87 40.2
Prupe.2G143700 Prunus persica HOM05D003566 ORTHO05D005288 9.9e-07 59.7 86 39.5
CANSAT56G0647 Cannabis sativa HOM05D003566 ORTHO05D005288 1.3e-06 59.3 87 39.1
FAN10G1568 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.3e-06 59.3 86 39.5
CANSAT56G3470 Cannabis sativa HOM05D003566 ORTHO05D005288 1.7e-06 58.9 87 39.1
GSVIVG01027673001 Vitis vinifera HOM05D003566 ORTHO05D005288 1.7e-06 58.9 87 39.1
MSTRG.17176 Avicennia marina HOM05D003566 ORTHO05D005288 2.2e-06 58.5 87 39.1
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 2.2e-06 58.5 85 40.0
Hma1.2p1_0301F.1_g118610 Hydrangea macrophylla HOM05D003566 ORTHO05D005288 2.2e-06 58.5 87 39.1
PGR004G2250 Punica granatum HOM05D003566 ORTHO05D005288 2.2e-06 58.5 87 37.9
THA.LOC104817242 Tarenaya hassleriana HOM05D003566 ORTHO05D005288 2.2e-06 58.5 87 39.1
arahy.Tifrunner.gnm1.ann1.9A4JNA Arachis hypogaea HOM05D003566 ORTHO05D005288 2.9e-06 58.2 87 39.1
arahy.Tifrunner.gnm1.ann1.VTP8RR Arachis hypogaea HOM05D003566 ORTHO05D005288 2.9e-06 58.2 87 39.1
Manes.01G266800 Manihot esculenta HOM05D003566 ORTHO05D005288 2.9e-06 58.2 86 39.5
Potri.002G146400 Populus trichocarpa HOM05D003566 ORTHO05D005288 2.9e-06 58.2 87 40.2
SalBow5G0834 Salvia bowleyana HOM05D003566 ORTHO05D005288 2.9e-06 58.2 99 37.4
Ca_19954_v3 Cicer arietinum L. HOM05D003566 ORTHO05D005288 3.8e-06 57.8 86 38.4
Migut.B01621 Erythranthe guttata HOM05D003566 ORTHO05D005288 3.8e-06 57.8 87 37.9
ATR0757G160 Amborella trichopoda HOM05D003566 ORTHO05D005288 4.9e-06 57.4 86 39.5
CDE04G0743 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 4.9e-06 57.4 86 37.2
CDE12G0626 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 4.9e-06 57.4 86 37.2
Eucgr.D02465 Eucalyptus grandis HOM05D003566 ORTHO05D005288 4.9e-06 57.4 87 37.9
FAN03G0287 Fragaria x ananassa HOM05D003566 ORTHO05D005288 4.9e-06 57.4 86 39.5
FAN06G2304 Fragaria x ananassa HOM05D003566 ORTHO05D005288 4.9e-06 57.4 86 39.5
FAN06G3189 Fragaria x ananassa HOM05D003566 ORTHO05D005288 4.9e-06 57.4 86 39.5
FAN10G2501 Fragaria x ananassa HOM05D003566 ORTHO05D005288 4.9e-06 57.4 86 39.5
Aqoxy7G00661 Aquilegia oxysepala HOM05D003566 ORTHO05D005288 6.4e-06 57.0 173 29.5
FAN01G1013 Fragaria x ananassa HOM05D003566 ORTHO05D005288 6.4e-06 57.0 86 39.5
Lj3g0026165 Lotus japonicus HOM05D003566 ORTHO05D005288 6.4e-06 57.0 86 38.4
Lalb_Chr07g0189911 Lupinus albus HOM05D003566 ORTHO05D005288 6.4e-06 57.0 86 38.4
Sc23g0003670 Simmondsia chinensis HOM05D003566 ORTHO05D005288 6.4e-06 57.0 87 41.4
Glyma.01G139600 Glycine max HOM05D003566 ORTHO05D005288 8.4e-06 56.6 87 36.8
Nn1g01139 Nelumbo nucifera HOM05D003566 ORTHO05D005288 8.4e-06 56.6 86 39.5


User provided reference genes

Program Settings