Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.9e-207 724.9 357 100.0
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 6.1e-197 690.6 359 95.8
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 9.5e-174 613.6 360 86.7
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.8e-172 609.4 362 85.1
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 3.1e-172 608.6 362 85.1
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 2.5e-166 589.0 366 85.0
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 9.6e-166 587.0 359 83.0
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 6.5e-98 361.7 374 55.6
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.2e-97 359.4 379 54.4
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.2e-94 350.9 374 54.8
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.5e-94 350.5 375 54.7
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 1.3e-93 347.4 371 53.9
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 6.3e-93 345.1 368 54.3
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 8.3e-93 344.7 355 51.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 3.1e-92 342.8 382 53.9
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 3.5e-91 339.3 354 54.0
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 1.7e-90 337.0 377 50.9
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 2.5e-89 333.2 377 50.7
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.4e-87 327.4 367 52.6
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 2.3e-87 326.6 383 49.1
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 4.0e-87 325.9 377 52.0
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.4e-86 322.4 379 50.4
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 4.4e-86 322.4 381 49.1
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 9.8e-86 321.2 383 48.8
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.3e-85 320.9 385 48.8
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.3e-85 320.9 368 50.3
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.7e-85 320.5 389 49.6
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 1.7e-85 320.5 366 51.9
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 4.9e-85 318.9 386 47.9
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.1e-84 317.8 355 54.1
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.1e-84 317.8 376 49.7
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.8e-84 317.0 352 51.7
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 3.1e-84 316.2 383 52.0
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 3.1e-84 316.2 383 52.0
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.7e-83 313.2 371 48.5
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.3e-82 310.8 378 49.5
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.7e-82 310.5 365 50.1
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 2.9e-82 309.7 373 50.9
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 3.8e-82 309.3 365 49.6
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.1e-81 307.8 336 52.4
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 7.3e-81 305.1 380 49.7
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 8.0e-80 301.6 370 48.1
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 4.0e-79 299.3 361 50.1
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 6.8e-79 298.5 381 48.3
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.5e-78 297.4 367 47.7
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 9.8e-78 294.7 359 49.3
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 1.7e-77 293.9 379 46.2
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.9e-77 293.1 366 49.2
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.7e-77 292.7 366 48.9
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 8.3e-77 291.6 361 49.9
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 8.3e-77 291.6 373 46.6
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.4e-76 290.8 370 48.9
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 5.4e-76 288.9 351 50.1
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 1.7e-74 283.9 361 46.8
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.7e-74 283.9 380 47.1
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 6.6e-74 282.0 351 49.0
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 3.3e-73 279.6 380 46.6
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 9.5e-73 278.1 356 48.9
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.8e-71 273.9 361 46.3
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 3.1e-71 273.1 354 46.9
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 8.9e-71 271.6 357 46.5
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 2.0e-70 270.4 365 44.9
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 1.4e-68 264.2 353 45.6
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.9e-68 263.8 382 43.7
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 5.4e-68 262.3 378 44.2
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.0e-67 260.4 364 44.0
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.7e-67 260.0 375 42.7
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 7.8e-67 258.5 354 44.6
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.9e-66 256.1 386 42.5
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 6.6e-66 255.4 359 44.3
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.1e-65 254.6 382 41.6
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 2.5e-65 253.4 360 43.9
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 4.3e-65 252.7 375 42.4
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 5.6e-65 252.3 357 43.1
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 2.1e-64 250.4 357 44.5
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 2.1e-64 250.4 353 45.0
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 4.7e-64 249.2 351 45.0
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 6.2e-64 248.8 351 44.7
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 6.2e-64 248.8 357 45.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-63 247.7 363 43.8
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.8e-63 247.3 358 43.3
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 3.1e-63 246.5 358 42.5
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 3.1e-63 246.5 376 44.4
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 4.0e-63 246.1 335 46.0
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 5.2e-63 245.7 366 43.7
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 5.2e-63 245.7 449 39.2
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 8.9e-63 245.0 363 43.8
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 2.6e-62 243.4 363 43.8
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.9e-60 237.3 361 43.2
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.9e-60 237.3 364 42.3
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 4.1e-60 236.1 445 39.1
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 5.4e-60 235.7 384 43.5
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 3.5e-59 233.0 368 41.6
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 2.5e-57 226.9 351 41.9
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 9.5e-57 224.9 367 43.9
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.6e-56 224.2 371 39.4
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.1e-56 223.8 338 43.8
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 3.6e-56 223.0 420 39.8
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.5e-54 217.6 210 54.8
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 6.4e-53 212.2 338 41.1
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.4e-52 211.1 349 43.3
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.9e-52 210.7 256 48.0
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.2e-52 209.9 251 48.6
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 4.1e-52 209.5 250 48.4
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.6e-51 207.6 329 40.4
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 2.7e-51 206.8 359 40.4
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 4.3e-49 199.5 362 38.7
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 4.7e-48 196.1 360 41.4
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.1e-47 194.9 351 38.2
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 5.2e-47 192.6 369 37.4
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 2.0e-46 190.7 366 38.0
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 3.8e-45 186.4 221 52.0
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 7.1e-44 182.2 190 54.2
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 3.5e-43 179.9 355 38.3
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 6.6e-42 175.6 291 40.9
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 6.6e-42 175.6 362 38.1
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 5.6e-41 172.6 189 51.3
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 9.6e-41 171.8 357 35.9
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 1.6e-40 171.0 356 36.0
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 5.3e-39 166.0 184 48.4
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 4.2e-36 156.4 124 59.7
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 6.0e-35 152.5 277 39.0
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.3e-34 151.4 357 33.9
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 6.7e-34 149.1 194 49.5
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 6.7e-26 122.5 116 59.5
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 4.8e-24 116.3 141 52.5
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 2.0e-22 110.9 230 37.4
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 9.3e-20 102.1 155 40.6
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.2e-19 101.7 155 40.0
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.3e-18 98.2 351 31.6
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 3.9e-18 96.7 93 55.9
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.8e-13 80.1 158 32.9
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.9e-12 77.8 134 37.3
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.9e-12 77.8 172 32.6
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 3.2e-12 77.0 356 25.6
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.7e-11 73.9 162 30.2
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 1.5e-09 68.2 85 44.7
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.9e-09 67.8 155 31.6
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.9e-09 67.8 155 31.6
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.9e-09 67.8 155 31.6
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 1.9e-09 67.8 155 31.6
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 1.9e-09 67.8 155 31.6
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 4.3e-09 66.6 155 31.0
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 4.3e-09 66.6 139 32.4
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 5.7e-09 66.2 170 28.2
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 9.7e-09 65.5 155 31.0
TAR371G0269 Trochodendron aralioides HOM05D001735 ORTHO05D001640 1.7e-08 64.7 171 29.2
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 6.3e-08 62.8 137 29.9
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 1.1e-07 62.0 203 26.1
TAR622G0673 Trochodendron aralioides HOM05D001735 ORTHO05D001640 3.1e-07 60.5 194 26.3
Cpa.g.sc4.106 Carica papaya HOM05D001735 ORTHO05D001640 1.2e-06 58.5 204 27.9
MBI11_g00913_MAGBIO Magnolia biondii HOM05D001735 ORTHO05D001640 1.2e-06 58.5 185 24.9
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 3.4e-06 57.0 66 48.5
FAN13G2372 Fragaria x ananassa HOM05D001735 ORTHO05D001640 3.4e-06 57.0 168 29.8
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 5.9e-06 56.2 173 27.7


User provided reference genes

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