Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.4e-51 205.3 110 100.0
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.0e-41 173.3 110 86.4
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.7e-41 172.6 110 85.5
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 2.5e-40 168.7 111 84.7
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 2.5e-40 168.7 111 84.7
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 2.5e-40 168.7 111 84.7
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 3.6e-39 164.9 110 81.8
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 4.7e-39 164.5 110 81.8
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.4e-35 152.9 112 75.0
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 7.0e-35 150.6 111 74.8
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.2e-34 149.8 110 72.7
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.2e-34 149.8 110 72.7
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.1e-34 149.1 112 75.9
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 74.5
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 3.5e-34 148.3 111 75.7
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 3.5e-34 148.3 110 74.5
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 74.8
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 74.8
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 74.8
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 7.8e-34 147.1 111 74.8
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 1.0e-33 146.7 111 74.8
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 1.7e-33 146.0 111 73.9
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 3.0e-33 145.2 111 74.8
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 3.0e-33 145.2 111 73.9
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 3.0e-33 145.2 111 73.9
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 5.0e-33 144.4 111 73.9
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 5.0e-33 144.4 111 73.9
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 6.6e-33 144.1 111 73.9
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 6.6e-33 144.1 111 73.0
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 1.5e-32 142.9 111 72.1
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 1.5e-32 142.9 111 73.9
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 1.5e-32 142.9 109 73.4
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 2.5e-32 142.1 111 71.2
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 2.5e-32 142.1 111 73.0
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 2.5e-32 142.1 111 71.2
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 3.3e-32 141.7 111 71.2
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 3.3e-32 141.7 111 72.1
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 4.3e-32 141.4 111 72.1
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 5.6e-32 141.0 111 71.2
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 5.6e-32 141.0 111 71.2
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 5.6e-32 141.0 107 73.8
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 5.6e-32 141.0 111 73.0
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 7.3e-32 140.6 110 75.5
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 7.3e-32 140.6 111 71.2
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 7.3e-32 140.6 111 71.2
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 9.5e-32 140.2 111 72.1
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 1.2e-31 139.8 111 71.2
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.2e-31 139.8 112 71.4
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 1.6e-31 139.4 109 72.5
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.6e-31 139.4 110 72.7
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 2.1e-31 139.0 109 71.6
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 2.1e-31 139.0 111 72.1
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 2.1e-31 139.0 111 72.1
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 2.8e-31 138.7 104 75.0
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 4.7e-31 137.9 112 70.5
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 4.7e-31 137.9 112 70.5
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 6.2e-31 137.5 112 71.4
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 6.2e-31 137.5 109 71.6
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.1e-30 136.7 111 70.3
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.1e-30 136.7 112 72.3
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.1e-30 136.7 108 72.2
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.1e-30 136.7 109 69.7
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 1.1e-30 136.7 111 70.3
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 1.4e-30 136.3 111 70.3
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.4e-30 136.3 111 70.3
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 1.4e-30 136.3 107 72.9
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 1.4e-30 136.3 111 71.2
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 1.8e-30 136.0 110 69.1
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 2.3e-30 135.6 112 71.4
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 2.3e-30 135.6 111 69.4
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.1e-30 135.2 110 72.7
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.0e-30 134.8 111 69.4
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.0e-30 134.8 111 69.4
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 4.0e-30 134.8 111 69.4
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 5.2e-30 134.4 112 70.5
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 5.2e-30 134.4 109 70.6
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 5.2e-30 134.4 109 70.6
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 5.2e-30 134.4 109 70.6
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 5.2e-30 134.4 99 74.7
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 6.8e-30 134.0 101 73.3
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 6.8e-30 134.0 109 69.7
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 8.9e-30 133.7 111 69.4
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 8.9e-30 133.7 111 68.5
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 2.6e-29 132.1 111 67.6
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.6e-29 132.1 111 70.3
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 4.4e-29 131.3 111 66.7
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 4.4e-29 131.3 100 70.0
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 4.4e-29 131.3 112 68.8
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 4.4e-29 131.3 100 70.0
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 5.8e-29 131.0 99 73.7
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 5.8e-29 131.0 99 74.7
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 5.8e-29 131.0 127 62.2
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 7.5e-29 130.6 112 68.8
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 7.5e-29 130.6 133 60.9
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 1.3e-28 129.8 111 66.7
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.2e-28 129.0 101 70.3
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.7e-28 128.3 112 67.9
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 4.9e-28 127.9 111 66.7
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 6.4e-28 127.5 111 67.6
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 8.3e-28 127.1 108 67.6
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 1.1e-27 126.7 111 66.7
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 1.1e-27 126.7 111 66.7
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 1.1e-27 126.7 105 64.8
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.4e-27 126.3 108 67.6
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 1.4e-27 126.3 111 66.7
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 1.4e-27 126.3 111 66.7
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 1.4e-27 126.3 111 66.7
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 1.4e-27 126.3 111 66.7
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 1.4e-27 126.3 112 68.8
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 1.9e-27 125.9 111 65.8
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.9e-27 125.9 111 66.7
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 3.2e-27 125.2 112 66.1
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 3.2e-27 125.2 108 66.7
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 4.1e-27 124.8 111 64.0
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 5.4e-27 124.4 111 64.9
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 5.4e-27 124.4 108 65.7
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 7.1e-27 124.0 108 66.7
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.6e-26 122.9 108 65.7
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 2.1e-26 122.5 108 66.7
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 2.1e-26 122.5 116 62.9
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.0e-25 120.2 112 61.6
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.7e-25 119.4 108 61.1
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 3.0e-25 118.6 96 68.8
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.9e-25 118.2 103 65.0
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 8.6e-25 117.1 112 62.5
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 5.6e-24 114.4 107 64.5
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.2e-23 113.2 177 45.2
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 6.2e-23 110.9 108 57.4
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 1.8e-22 109.4 95 62.1
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 3.4e-21 105.1 83 74.7
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 5.8e-21 104.4 91 64.8
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 7.1e-19 97.4 99 61.6
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 2.7e-18 95.5 111 55.0
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.2e-15 86.7 68 69.1
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 4.9e-12 74.7 62 71.0
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 8.4e-12 73.9 88 50.0
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.4e-11 73.2 51 72.5
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 5.4e-11 71.2 50 78.0
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 7.1e-11 70.9 92 54.3
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 1.0e-09 67.0 62 61.3
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 5.1e-09 64.7 67 56.7
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 8.7e-09 63.9 48 75.0
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.5e-08 63.2 60 61.7
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 2.5e-08 62.4 54 68.5


User provided reference genes

Program Settings