Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 0.0e+00 1340.1 694 100.0
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 0.0e+00 1166.4 735 84.2
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 1.3e-256 889.8 809 63.7
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 1.1e-247 860.1 768 65.5
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 5.6e-247 857.8 769 65.8
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 4.5e-244 848.2 768 64.8
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.3e-227 793.5 835 56.2
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.7e-227 793.1 833 56.5
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 2.9e-227 792.3 835 56.5
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.6e-220 769.2 834 55.0
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 3.4e-220 768.8 835 55.2
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.0e-215 753.1 835 54.0
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 2.5e-194 682.9 833 49.9
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 2.3e-192 676.4 840 49.8
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.5e-191 673.7 833 49.8
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 9.2e-189 664.5 763 53.5
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 6.8e-176 621.7 814 48.0
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.4e-173 612.1 838 47.0
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 7.0e-173 611.7 838 46.2
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 1.6e-172 610.5 837 44.6
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.0e-171 607.8 838 46.1
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 2.3e-171 606.7 828 45.4
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 1.6e-169 600.5 834 44.7
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 1.1e-168 597.8 838 45.1
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 3.1e-168 596.3 820 44.8
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 1.2e-167 594.3 830 44.7
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 1.5e-167 594.0 834 43.9
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 3.4e-167 592.8 770 49.7
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 3.7e-166 589.3 808 48.0
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 4.9e-166 589.0 830 44.3
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 8.3e-166 588.2 724 48.2
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 2.7e-164 583.2 832 43.6
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.0e-163 579.7 835 44.7
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 5.1e-163 578.9 842 44.2
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 1.2e-161 574.3 837 44.8
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.6e-161 573.9 839 44.5
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.4e-160 570.9 838 44.2
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 5.2e-160 568.9 836 43.9
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 8.4e-158 561.6 838 43.1
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 6.0e-156 555.4 835 43.5
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.3e-155 554.3 809 45.7
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 1.7e-155 553.9 838 41.9
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.9e-154 550.4 826 42.7
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 3.3e-154 549.7 838 43.1
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 7.3e-154 548.5 838 43.1
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 7.3e-154 548.5 827 42.8
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 9.6e-154 548.1 833 42.0
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 6.2e-153 545.4 838 42.8
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 8.1e-153 545.0 826 42.5
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.8e-152 543.9 827 43.8
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 2.4e-152 543.5 823 43.1
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 4.4e-151 539.3 830 42.8
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 5.8e-151 538.9 810 44.1
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 9.9e-151 538.1 831 42.5
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 1.7e-150 537.3 830 42.4
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 6.4e-150 535.4 813 43.8
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.9e-149 533.9 826 43.0
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.2e-148 531.2 840 42.4
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 2.1e-148 530.4 791 43.0
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 3.5e-148 529.6 798 43.7
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 2.3e-147 526.9 803 43.7
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.1e-146 524.6 836 42.1
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.5e-146 523.5 836 42.0
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.3e-145 521.2 832 40.5
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 1.4e-144 517.7 831 40.8
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 2.6e-143 513.5 842 40.9
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 4.5e-143 512.7 813 42.2
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 4.5e-143 512.7 788 43.5
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 4.5e-143 512.7 842 42.0
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.3e-142 511.1 751 43.8
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.3e-142 511.1 831 41.4
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.3e-142 511.1 833 41.5
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 1.7e-142 510.8 680 47.8
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 4.2e-141 506.1 764 45.3
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 9.3e-141 505.0 840 40.8
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 3.5e-140 503.1 839 40.0
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 7.9e-140 501.9 833 41.4
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.3e-139 501.1 826 40.3
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 2.8e-137 493.4 829 39.0
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-136 490.3 836 40.9
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-136 490.3 836 40.9
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 1.4e-133 481.1 819 41.9
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 7.9e-132 475.3 803 41.0
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 1.3e-131 474.6 835 38.7
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 6.9e-128 462.2 775 41.8
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 9.0e-128 461.8 616 48.4
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.5e-127 461.1 908 36.1
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 6.5e-126 455.7 891 36.6
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.9e-125 454.1 815 39.3
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 3.0e-123 446.8 812 38.9
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 1.5e-122 444.5 838 37.2
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.9e-122 444.1 891 35.4
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 5.7e-122 442.6 745 40.9
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 2.8e-121 440.3 875 37.0
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 6.3e-121 439.1 892 35.3
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 2.4e-120 437.2 875 36.7
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 2.0e-119 434.1 905 34.0
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 7.6e-119 432.2 811 39.7
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 7.6e-119 432.2 804 39.6
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 3.6e-116 423.3 743 40.1
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 3.6e-116 423.3 743 40.1
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 1.8e-115 421.0 747 40.6
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 3.0e-115 420.2 757 40.2
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 6.7e-115 419.1 738 39.8
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 6.7e-115 419.1 738 39.8
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 4.3e-114 416.4 742 40.3
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 1.7e-113 414.5 758 40.5
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 2.8e-113 413.7 792 39.1
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 4.8e-113 412.9 756 39.8
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 6.9e-112 409.1 758 39.2
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 1.0e-110 405.2 755 39.5
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 1.8e-107 394.4 754 39.4
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 2.4e-104 384.0 770 37.9
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 8.5e-102 375.6 838 35.1
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 8.8e-99 365.5 607 42.8
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 2.0e-98 364.4 750 38.3
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 2.9e-94 350.5 802 35.3
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 4.4e-90 336.7 731 36.8
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 9.7e-90 335.5 834 33.0
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 4.2e-77 293.5 700 35.6
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 1.2e-76 292.0 854 32.2
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 5.9e-71 273.1 567 37.0
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 1.0e-70 272.3 835 31.4
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 1.2e-66 258.8 400 41.2
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.2e-65 254.6 634 33.3
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.4e-64 251.1 594 34.7
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 9.8e-58 229.2 858 29.7
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 2.7e-55 221.1 857 28.2
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.1e-51 209.1 847 28.7
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 9.2e-48 196.1 419 39.9
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 1.4e-40 172.2 226 49.1
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.5e-37 161.4 181 50.3
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 2.6e-34 151.4 460 32.6
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 3.4e-34 151.0 213 44.1
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 4.3e-29 134.0 228 36.0
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.6e-28 132.1 828 26.0
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.6e-28 132.1 286 35.7
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 6.9e-27 126.7 209 42.6
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.8e-26 123.6 379 32.2
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 4.5e-18 97.4 508 26.6
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 1.3e-14 85.9 138 43.5
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.1e-14 84.0 351 26.2
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 6.7e-14 83.6 135 45.2
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 1.1e-13 82.8 163 39.3
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 1.5e-13 82.4 503 24.5
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 3.8e-09 67.8 207 30.0
Lsat_1_v5_gn_8_109380 Lactuca sativa HOM05D002515 ORTHO05D002722 1.4e-08 65.9 267 26.2
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 1.9e-08 65.5 93 46.2
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 2.5e-08 65.1 291 25.1
HPP92_019812 Vanilla planifolia HOM05D002036 ORTHO05D001913 1.6e-07 62.4 292 24.0
PSO764G0032 Papaver somniferum HOM05D002769 ORTHO05D003160 6.0e-07 60.5 186 24.7
Dinv31022 Davidia involucrata HOM05D033086 ORTHO05D005796 7.9e-07 60.1 77 45.5
Dinv31080 Davidia involucrata HOM05D033086 ORTHO05D005796 7.9e-07 60.1 77 45.5
Lj2A95G42 Lonicera japonica HOM05D002515 ORTHO05D002722 5.1e-06 57.4 171 26.9
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 6.7e-06 57.0 180 28.3
Zm00001eb211790 Zea mays HOM05D063750 ORTHO05D001913 6.7e-06 57.0 185 28.1


User provided reference genes

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