Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2497.2 1261 100.0
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2414.8 1288 94.9
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2405.6 1283 95.1
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2368.2 1379 89.1
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2197.2 1288 85.6
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2192.2 1288 85.6
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2174.8 1288 83.7
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2164.4 1287 84.2
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2164.0 1288 84.3
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2162.5 1302 83.6
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2155.6 1287 84.0
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2154.8 1288 83.2
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2152.5 1288 83.2
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2147.5 1287 83.4
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2147.1 1288 83.0
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2144.4 1287 84.3
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2143.2 1288 83.0
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2143.2 1287 83.2
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2135.9 1288 83.2
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2135.5 1288 83.2
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2126.7 1288 82.8
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2123.6 1293 82.8
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2121.3 1287 82.8
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2120.9 1287 82.4
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2116.7 1291 82.5
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2116.7 1288 82.9
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2116.3 1288 82.5
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2114.3 1288 81.9
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2113.6 1301 81.7
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2112.0 1288 82.3
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2107.0 1285 82.6
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2105.9 1293 82.4
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2105.5 1289 82.2
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2103.6 1289 82.2
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2101.2 1301 81.6
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2101.2 1288 82.0
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2095.5 1289 81.8
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2092.0 1295 81.3
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2088.2 1288 81.6
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2083.9 1326 79.6
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2080.8 1272 82.1
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2080.1 1289 81.1
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2078.5 1288 80.9
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2077.8 1260 82.7
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2075.1 1300 81.0
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2072.0 1284 81.4
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2070.8 1300 80.8
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2066.6 1288 80.7
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2060.8 1295 80.9
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2053.5 1295 79.5
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2053.5 1297 79.7
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2048.9 1288 80.2
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2047.7 1286 80.1
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2045.4 1286 79.9
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2045.0 1290 79.7
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2043.9 1286 79.8
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2042.7 1286 79.7
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2041.2 1287 80.0
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2037.3 1298 79.0
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2034.2 1288 79.8
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2030.0 1294 79.5
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2026.5 1312 78.7
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2023.1 1290 79.6
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2020.7 1308 79.2
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2018.4 1288 79.3
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2013.4 1293 78.4
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2005.3 1289 78.7
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 2004.6 1215 81.6
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2003.0 1294 78.2
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2002.3 1283 78.8
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1977.2 1174 83.5
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 1964.5 1299 76.8
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1880.5 1531 66.1
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1859.3 1223 76.8
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1850.5 1293 73.0
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1846.2 1262 75.3
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1822.0 1290 72.0
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1736.9 1289 71.3
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1698.3 911 92.8
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1558.9 959 82.0
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1558.5 908 84.0
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1549.3 955 81.8
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1523.5 1069 73.9
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1523.5 911 82.2
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1483.4 1210 64.5
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1483.0 1157 66.5
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1480.7 912 80.3
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1480.3 1268 59.0
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1479.9 1267 60.1
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1442.9 910 78.5
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1440.2 910 78.5
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1438.7 910 78.5
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1431.4 1329 55.7
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1417.5 1290 55.9
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1412.5 854 82.1
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1391.7 956 73.8
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1325.5 1282 53.4
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1254.6 914 68.5
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 5.7e-306 1054.7 687 78.6
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 2.7e-303 1045.8 805 70.8
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 8.1e-244 848.2 828 56.9
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 9.3e-224 781.6 471 84.9
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 2.8e-212 743.4 434 86.4
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 2.6e-197 693.7 499 72.9
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.3e-185 654.8 351 96.3
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 8.8e-182 642.1 545 63.1
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 1.4e-179 634.8 351 91.7
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 2.5e-176 624.0 348 91.4
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 5.4e-171 606.3 353 88.1
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 1.2e-167 595.1 354 86.7
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.3e-164 585.1 451 66.7
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.1e-163 582.0 420 70.0
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 1.7e-161 574.7 348 85.9
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 2.6e-157 560.8 349 83.7
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 2.1e-154 551.2 410 71.2
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 7.3e-152 542.7 336 79.2
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.4e-150 538.5 376 71.5
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 7.6e-149 532.7 280 97.5
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 4.6e-146 523.5 438 66.7
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 1.2e-138 498.8 303 80.5
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 3.9e-137 493.8 636 43.4
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 1.1e-128 465.7 257 91.8
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 4.5e-117 427.2 283 80.9
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 1.7e-116 425.2 244 86.5
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.0e-109 401.7 348 62.4
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 4.5e-109 400.6 274 71.9
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 5.1e-105 387.1 260 78.5
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 2.2e-103 381.7 256 79.7
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 5.5e-83 313.9 264 60.6
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.5e-72 279.3 154 91.6
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 5.4e-70 270.8 466 34.1
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.6e-69 269.2 167 77.8
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.3e-60 239.6 134 88.8
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.5e-59 236.1 426 38.5
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 5.6e-59 234.2 130 91.5
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 2.6e-56 225.3 134 82.8
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 4.4e-56 224.6 127 86.6
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 1.4e-54 219.5 142 73.2
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 8.0e-50 203.8 119 82.4
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.8e-42 178.7 127 67.7
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 5.8e-40 171.0 123 72.4
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 3.2e-38 165.2 161 53.4
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 9.2e-38 163.7 99 78.8
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 6.0e-37 161.0 99 77.8
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.5e-35 156.4 128 68.0
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 4.3e-35 154.8 113 66.4
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 7.3e-35 154.1 123 66.7
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 5.4e-30 137.9 95 63.2
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.1e-25 123.6 133 47.4
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 9.9e-24 117.1 74 77.0
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 9.9e-24 117.1 74 75.7
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 9.9e-24 117.1 74 77.0
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.6e-21 109.8 72 70.8
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 1.7e-20 106.3 130 49.2
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 7.6e-16 90.9 99 53.5
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.9e-14 86.3 54 77.8
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 3.7e-10 72.0 77 50.6
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 4.0e-09 68.6 142 35.2


User provided reference genes

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