Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 0.0e+00 1952.2 987 100.0
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 0.0e+00 1783.5 987 92.4
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 0.0e+00 1648.3 964 86.7
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 0.0e+00 1556.2 924 86.0
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 0.0e+00 1515.4 883 86.7
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1117.1 953 59.7
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 0.0e+00 1091.6 994 55.8
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 3.4e-311 1071.6 661 83.7
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 8.4e-305 1050.4 984 55.8
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 1.6e-303 1046.2 984 56.4
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 4.6e-303 1044.6 980 55.8
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 1.8e-302 1042.7 952 56.8
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.8e-299 1032.7 1003 54.9
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 6.5e-297 1024.2 959 55.4
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 6.7e-294 1014.2 986 54.0
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.4e-291 1006.5 997 53.9
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 5.3e-291 1004.6 971 53.6
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 1.3e-289 1000.0 885 58.1
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 2.9e-289 998.8 979 54.3
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 1.0e-286 990.3 985 54.3
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 1.8e-286 989.6 980 53.5
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 1.4e-280 969.9 985 51.8
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 9.4e-280 967.2 968 53.8
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 3.6e-279 965.3 983 51.6
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 1.3e-276 956.8 940 54.5
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 3.7e-276 955.3 960 52.0
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 2.4e-275 952.6 972 51.2
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 2.6e-274 949.1 990 50.1
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 5.9e-274 948.0 968 51.5
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 1.0e-273 947.2 984 50.5
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 1.0e-273 947.2 990 50.2
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 1.3e-273 946.8 982 50.1
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 8.0e-271 937.6 974 51.0
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 3.0e-270 935.6 1024 49.1
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 3.3e-269 932.2 985 50.2
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 1.7e-268 929.9 983 49.3
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 9.1e-267 924.1 916 52.8
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 4.5e-266 921.8 954 50.1
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 1.7e-265 919.8 773 60.9
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 5.0e-265 918.3 986 49.8
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 6.5e-265 917.9 833 57.9
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 7.2e-264 914.4 994 49.2
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.2e-263 913.7 986 49.6
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.6e-263 913.3 968 50.6
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 2.4e-259 899.4 972 49.8
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 1.2e-258 897.1 996 48.2
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 2.1e-255 886.3 977 50.1
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 6.8e-254 881.3 980 47.2
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.2e-250 870.5 963 47.4
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 2.0e-250 869.8 981 46.7
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 1.1e-248 864.0 967 47.2
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 1.5e-248 863.6 989 47.6
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 5.6e-248 861.7 949 48.6
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 7.3e-248 861.3 908 50.8
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.0e-246 857.4 982 47.8
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 1.4e-243 847.0 966 45.8
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 6.6e-241 838.2 956 47.8
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 1.5e-240 837.0 970 46.9
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 3.3e-240 835.9 968 45.8
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 2.2e-236 823.2 995 44.2
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 6.0e-234 815.1 987 45.4
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 1.3e-233 813.9 903 48.5
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 2.5e-232 809.7 992 44.2
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 5.4e-227 792.0 916 46.4
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 2.1e-226 790.0 962 43.7
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 2.1e-226 790.0 915 45.6
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 3.5e-226 789.3 930 47.0
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 2.5e-224 783.1 907 47.0
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 2.8e-223 779.6 927 45.1
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 2.6e-221 773.1 986 42.8
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 2.6e-221 773.1 980 43.3
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 5.8e-221 771.9 989 43.4
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 9.9e-221 771.2 989 43.4
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 2.2e-220 770.0 989 43.2
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 6.4e-220 768.5 989 43.0
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 6.4e-220 768.5 937 44.8
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 8.4e-220 768.1 1011 41.9
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 4.2e-219 765.8 980 43.3
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 7.1e-219 765.0 1031 44.5
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 1.2e-218 764.2 974 43.1
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 2.3e-217 760.0 991 42.4
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 6.6e-217 758.4 1032 44.2
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 1.5e-216 757.3 971 42.7
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 2.8e-215 753.1 985 42.5
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 8.1e-215 751.5 961 43.0
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 3.1e-214 749.6 986 42.9
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 3.8e-212 742.7 1003 41.1
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 1.7e-209 733.8 985 41.8
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 3.3e-208 729.6 939 43.1
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 9.3e-203 711.4 975 40.8
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 1.8e-190 670.6 914 41.7
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.3e-185 654.4 941 43.7
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 1.5e-184 651.0 658 50.6
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 2.4e-182 643.7 831 41.9
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 4.8e-175 619.4 983 37.5
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 5.5e-171 605.9 694 47.3
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 3.6e-170 603.2 818 40.3
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 8.5e-164 582.0 1007 36.4
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 6.8e-153 545.8 890 37.0
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 5.7e-144 516.2 926 36.0
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.0e-116 425.6 999 30.2
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 1.1e-65 256.1 992 24.8
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.3e-63 249.2 582 30.8
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 6.9e-57 226.9 282 42.9
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 7.2e-54 216.9 318 40.3
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 2.1e-53 215.3 762 24.9
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 1.3e-39 169.5 169 53.8
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 1.1e-38 166.4 639 25.0
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 3.6e-37 161.4 191 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 4.1e-25 121.3 655 22.6
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 3.5e-24 118.2 136 47.8
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.0e-23 116.7 721 21.5
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 8.6e-23 113.6 106 55.7
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 2.3e-15 89.0 113 41.6
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 3.0e-07 62.0 73 45.2
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 3.3e-06 58.5 81 40.7
Gohir.D01G124101 Gossypium hirsutum HOM05D021756 ORTHO05D018943 7.3e-06 57.4 69 44.9


User provided reference genes

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