Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 0.0e+00 1191.0 669 100.0
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.9e-302 1040.4 671 89.3
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.5e-252 876.3 696 76.6
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 6.4e-240 834.3 695 75.5
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.1e-234 817.0 706 73.2
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.8e-229 799.7 709 71.7
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.0e-216 757.3 717 69.7
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 7.6e-132 475.3 740 51.6
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 5.4e-130 469.2 758 52.1
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 7.1e-122 442.2 772 48.1
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 9.3e-122 441.8 732 47.4
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 1.8e-120 437.6 698 47.4
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.5e-119 434.5 736 47.3
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.6e-118 431.0 759 48.6
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.9e-117 425.6 264 86.7
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.9e-115 419.5 759 48.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.5e-114 417.2 609 51.2
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.4e-109 401.4 793 43.5
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 6.9e-109 399.1 676 46.6
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 9.0e-109 398.7 688 49.3
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 3.8e-107 393.3 720 48.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 4.2e-106 389.8 767 45.1
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.2e-105 388.3 695 48.3
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.7e-102 377.9 693 46.0
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.8e-102 377.1 713 47.5
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.1e-101 375.2 771 45.7
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.4e-101 374.8 728 44.4
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.4e-101 374.0 683 47.7
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 2.4e-101 374.0 785 43.6
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 9.1e-101 372.1 775 43.6
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.0e-100 370.9 776 45.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.0e-100 370.9 671 47.7
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 4.5e-100 369.8 766 43.9
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.0e-99 368.6 777 44.3
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.7e-99 367.9 683 47.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.8e-99 366.7 738 43.8
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.9e-98 364.4 720 45.6
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 6.1e-97 359.4 685 44.1
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 3.9e-96 356.7 790 42.7
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.7e-94 351.3 713 44.2
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 4.1e-93 346.7 691 44.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.5e-92 344.7 683 46.3
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 3.4e-92 343.6 793 43.0
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 5.9e-92 342.8 771 43.8
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 6.5e-91 339.3 712 44.8
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 3.2e-90 337.0 779 40.8
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 4.2e-90 336.7 741 43.5
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.5e-90 336.3 741 43.3
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.5e-90 336.3 741 43.3
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.2e-89 335.1 796 42.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 8.0e-89 332.4 711 43.5
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 8.0e-89 332.4 684 44.9
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.1e-87 328.6 758 43.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 5.7e-87 326.2 752 42.4
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.4e-87 325.9 739 43.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 2.2e-86 324.3 794 41.4
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.7e-86 323.6 762 40.7
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 7.0e-85 319.3 740 44.3
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.6e-84 318.2 725 42.2
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 3.5e-84 317.0 722 41.0
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.5e-82 311.6 773 41.4
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 2.5e-82 310.8 780 41.2
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.2e-82 310.5 767 40.9
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 7.2e-82 309.3 692 43.5
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.1e-81 307.8 719 41.3
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 2.7e-81 307.4 698 42.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.4e-80 305.1 773 40.5
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 6.7e-80 302.8 762 41.3
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 8.8e-80 302.4 778 39.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.6e-79 300.8 788 40.9
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 2.6e-79 300.8 780 41.2
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 4.4e-79 300.1 746 41.3
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.7e-78 298.1 800 38.9
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.7e-78 298.1 681 39.6
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 4.8e-78 296.6 763 41.3
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 4.1e-77 293.5 591 43.7
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 9.1e-77 292.4 649 42.8
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.3e-75 288.5 751 39.5
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.9e-75 287.3 737 38.9
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.5e-74 285.0 682 41.1
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.1e-73 281.2 691 41.4
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.0e-72 278.9 674 41.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.4e-72 278.5 190 79.5
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.2e-71 275.4 657 39.6
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-71 275.4 652 40.3
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 5.7e-71 273.1 747 38.4
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.2e-70 271.2 706 39.0
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 3.7e-70 270.4 681 40.4
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 6.3e-70 269.6 657 41.9
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 5.4e-69 266.5 626 42.0
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.0e-68 264.6 775 35.9
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.0e-68 264.6 694 39.9
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 3.5e-68 263.8 655 39.7
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 2.3e-67 261.2 681 40.4
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 5.0e-67 260.0 786 36.1
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.6e-65 255.0 755 38.3
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.8e-64 251.5 760 37.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 5.2e-64 250.0 748 38.1
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.2e-62 244.6 756 38.6
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 4.9e-62 243.4 757 36.5
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.4e-61 241.9 497 42.5
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.7e-59 235.0 626 40.1
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.1e-58 232.3 757 37.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.6e-57 228.4 734 36.5
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 3.6e-57 227.3 710 36.6
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 8.9e-56 222.6 724 37.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.4e-55 220.7 685 40.0
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 5.8e-55 219.9 610 38.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.4e-54 216.5 608 39.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.0e-51 206.8 689 38.3
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.6e-51 206.5 601 39.9
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 4.3e-50 203.8 607 36.7
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 7.3e-50 203.0 746 35.8
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 9.5e-50 202.6 617 36.3
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.7e-49 200.3 580 40.7
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.2e-47 195.7 409 40.1
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.4e-47 193.7 740 34.9
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.8e-47 193.4 581 39.4
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 9.8e-47 192.6 485 41.9
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.7e-46 190.7 410 47.1
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.7e-46 190.7 256 50.4
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.4e-45 188.0 593 34.9
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.7e-44 184.5 752 34.4
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 7.8e-44 183.0 422 42.4
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.3e-43 182.2 669 35.1
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 2.5e-42 177.9 727 34.1
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.6e-41 174.1 746 34.5
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.6e-41 174.1 396 49.5
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 3.6e-41 174.1 623 34.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.8e-40 171.8 564 35.5
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.1e-40 171.0 714 32.8
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 3.4e-39 167.5 661 34.3
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.4e-39 167.2 741 33.3
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.9e-38 164.5 677 34.7
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.7e-38 164.1 690 32.8
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 7.1e-37 159.8 303 43.9
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.2e-36 159.1 753 34.3
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.7e-35 155.2 618 32.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.3e-35 154.8 691 34.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.1e-35 153.7 645 29.8
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.9e-34 151.8 157 58.6
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 3.3e-34 151.0 698 34.0
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.1e-32 146.0 393 37.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.5e-31 142.1 753 28.2
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 4.9e-30 137.1 484 35.1
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 6.4e-30 136.7 515 32.2
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.9e-27 127.5 432 42.1
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 2.5e-26 124.8 365 35.3
Peaxi162Scf00559g00031 Petunia axillaris HOM05D003795 ORTHO05D004308 3.3e-26 124.4 594 29.1
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 1.2e-25 122.5 192 50.5
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 4.0e-24 117.5 602 31.4
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 4.0e-24 117.5 602 31.4
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.6e-23 114.8 595 33.4
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.3e-22 112.5 598 28.6
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 2.4e-21 108.2 138 51.4
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.2e-21 107.8 603 29.7
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 4.6e-20 104.0 483 33.1
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 5.1e-19 100.5 325 43.1
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.5e-18 98.2 117 54.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.6e-17 95.5 232 38.4
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.1e-17 95.1 195 42.1
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 3.6e-17 94.4 142 47.2
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 4.8e-17 94.0 356 39.3
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.0e-11 76.3 135 43.7
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.3e-11 75.1 529 29.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.0e-11 74.7 94 50.0
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.5e-10 72.4 98 45.9
Oeu030973.1 Olea europaea HOM05D003795 ORTHO05D004308 3.7e-09 67.8 110 49.1
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.1e-08 66.2 136 36.8
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.4e-07 61.2 113 44.2
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 9.9e-07 59.7 58 56.9


User provided reference genes

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