Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.3e-128 462.2 230 100.0
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.7e-123 446.0 230 97.0
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.1e-111 406.8 228 89.0
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.3e-111 405.2 228 89.0
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 2.6e-108 395.6 228 86.4
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 2.9e-107 392.1 229 86.9
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 2.3e-88 329.3 223 70.9
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.5e-87 326.6 222 71.2
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 2.0e-87 326.2 230 72.2
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 2.2e-86 322.8 230 71.3
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.7e-86 322.0 231 70.1
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 8.2e-86 320.9 230 71.3
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 2.4e-85 319.3 231 68.0
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 4.1e-85 318.5 229 68.6
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 9.1e-85 317.4 228 67.1
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 3.5e-84 315.5 229 67.7
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 3.5e-84 315.5 229 67.7
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 5.9e-84 314.7 227 69.2
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.7e-83 313.2 229 68.1
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.2e-83 312.8 228 68.9
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 2.9e-83 312.4 226 69.9
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 5.0e-83 311.6 231 70.1
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 6.5e-83 311.2 230 68.7
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 6.5e-83 311.2 230 68.7
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 8.5e-83 310.8 227 69.2
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.1e-82 310.5 231 67.5
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 1.5e-82 310.1 225 68.9
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 2.5e-82 309.3 229 68.1
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 3.2e-82 308.9 230 67.8
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 5.5e-82 308.1 230 66.5
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 7.2e-82 307.8 229 67.7
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 1.2e-81 307.0 230 68.3
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 2.7e-81 305.8 235 65.1
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 2.7e-81 305.8 233 68.2
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 6.1e-81 304.7 231 66.7
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 6.1e-81 304.7 231 64.9
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 8.0e-81 304.3 229 68.6
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.4e-80 303.5 229 65.5
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 2.3e-80 302.8 231 69.3
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 3.0e-80 302.4 230 67.8
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 3.0e-80 302.4 231 66.7
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 4.0e-80 302.0 231 68.4
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 5.2e-80 301.6 232 65.9
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 8.8e-80 300.8 227 68.3
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 8.8e-80 300.8 234 66.7
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 2.0e-79 299.7 231 67.5
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 4.4e-79 298.5 230 66.5
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.4e-77 292.7 209 70.8
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 2.0e-76 289.7 227 65.2
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.7e-76 289.3 221 65.6
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 4.5e-76 288.5 231 64.9
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.0e-75 287.3 228 62.3
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 8.5e-75 284.3 219 65.8
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 1.1e-74 283.9 228 63.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.1e-74 283.9 206 69.4
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.5e-74 282.7 220 65.0
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.1e-73 279.6 227 64.8
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 2.7e-73 279.3 226 62.4
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 2.7e-73 279.3 230 62.2
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 1.2e-71 273.9 228 61.8
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.5e-71 273.5 229 62.0
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 4.4e-71 271.9 217 63.1
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 7.5e-71 271.2 226 60.2
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 1.7e-70 270.0 243 56.8
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 2.8e-70 269.2 211 65.9
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.7e-70 268.9 225 61.8
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.1e-69 267.3 282 53.2
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 1.4e-69 266.9 215 61.4
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 4.1e-69 265.4 231 59.3
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.5e-68 262.3 228 61.8
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 4.5e-68 261.9 228 62.3
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 3.8e-67 258.8 221 60.6
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 5.0e-67 258.5 233 60.1
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 6.6e-67 258.1 225 59.6
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.1e-66 257.3 227 59.0
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-66 257.3 228 61.4
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.1e-66 257.3 210 62.4
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 2.5e-66 256.1 228 58.8
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 2.5e-66 256.1 220 62.7
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 3.3e-66 255.8 217 62.2
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.2e-66 255.4 228 61.4
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 4.2e-66 255.4 209 61.2
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 5.5e-66 255.0 236 59.3
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 2.8e-65 252.7 216 59.7
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 6.1e-65 251.5 216 60.6
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 8.0e-65 251.1 215 57.7
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.4e-64 250.4 230 60.0
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 1.4e-64 250.4 228 57.5
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 3.0e-64 249.2 220 59.5
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 2.0e-63 246.5 229 55.5
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.6e-63 246.1 236 55.5
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 5.7e-63 245.0 229 55.0
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 7.5e-63 244.6 274 52.2
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 2.2e-62 243.0 234 57.7
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 6.3e-62 241.5 214 58.9
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 1.6e-60 236.9 237 54.9
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 2.9e-59 232.6 226 54.0
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 6.1e-57 224.9 201 60.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.0e-56 224.2 233 56.7
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 7.5e-55 218.0 204 57.8
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 3.7e-54 215.7 228 51.8
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 4.9e-54 215.3 135 83.7
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.1e-53 214.2 162 64.2
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.0e-51 207.6 222 52.3
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.6e-49 200.3 168 63.7
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.6e-49 200.3 231 48.5
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.3e-48 196.4 228 47.8
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.5e-47 193.7 233 45.9
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 2.6e-47 193.0 168 59.5
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.5e-42 177.2 232 46.1
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 3.3e-42 176.0 174 51.7
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 4.3e-42 175.6 234 44.0
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 5.6e-42 175.3 225 44.9
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 9.5e-42 174.5 263 40.3
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.4e-39 166.0 234 42.3
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 2.2e-38 163.3 129 60.5
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 8.3e-38 161.4 226 41.6
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 3.2e-37 159.5 211 46.4
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 9.2e-37 157.9 238 42.0
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 9.2e-37 157.9 136 59.6
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 5.1e-35 152.1 93 75.3
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.7e-30 137.1 93 65.6
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.4e-29 134.0 103 64.1
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 6.0e-28 128.6 106 64.2
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 1.3e-27 127.5 136 52.9
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 3.0e-27 126.3 138 50.0
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.1e-26 124.4 99 65.7
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 3.1e-24 116.3 153 43.8
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 3.5e-20 102.8 144 38.9
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.3e-19 100.1 55 85.5
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 7.3e-18 95.1 112 50.0
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.6e-17 94.0 74 63.5
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-16 91.3 128 44.5
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.2e-15 87.8 130 42.3
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.6e-15 86.7 73 60.3
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 7.6e-15 85.1 109 42.2
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 2.9e-14 83.2 186 30.6
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.2e-12 77.8 101 46.5
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 2.5e-10 70.1 86 47.7
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 7.4e-10 68.6 94 44.7


User provided reference genes

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