Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 0.0e+00 2001.5 1026 100.0
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 0.0e+00 1438.7 959 81.6
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 0.0e+00 1404.0 963 79.0
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 0.0e+00 1352.0 1035 71.5
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 0.0e+00 1333.2 963 74.7
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 0.0e+00 1300.0 970 72.3
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 5.2e-241 838.6 1001 51.4
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 1.4e-222 777.3 977 48.1
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 1.6e-218 763.8 979 47.6
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.0e-207 728.0 995 46.5
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 2.8e-202 709.9 982 46.1
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 1.7e-199 700.7 1004 45.9
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 2.2e-194 683.7 984 46.2
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 3.7e-194 682.9 984 46.3
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 6.3e-186 655.6 983 43.2
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 3.5e-184 649.8 1032 42.6
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 2.2e-183 647.1 895 46.5
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.4e-180 637.9 1009 43.1
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 4.4e-179 632.9 988 42.3
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 7.4e-179 632.1 1019 43.1
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 2.9e-175 620.2 1015 41.8
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 1.8e-172 610.9 1024 41.8
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 3.0e-172 610.1 984 42.2
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 6.7e-172 609.0 1010 43.2
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 6.3e-170 602.4 1016 41.2
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 1.2e-168 598.2 988 41.5
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 4.2e-166 589.7 1012 41.7
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 6.1e-165 585.9 995 42.0
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 8.0e-165 585.5 1028 41.4
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.0e-164 585.1 1017 42.3
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 2.6e-163 580.5 1014 41.6
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 4.1e-161 573.2 1070 39.9
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 5.4e-161 572.8 1010 41.8
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 5.4e-161 572.8 1011 41.3
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 6.6e-159 565.8 982 41.3
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 8.0e-157 558.9 1001 40.4
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.5e-155 554.7 928 41.8
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 2.8e-154 550.4 1024 40.4
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 5.4e-153 546.2 1021 39.3
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 1.6e-152 544.7 1017 39.6
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.1e-150 538.5 1022 39.1
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.5e-150 538.1 1008 37.8
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.9e-150 537.7 1032 39.1
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.5e-150 537.3 1022 39.2
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.7e-149 533.1 1025 39.2
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 8.9e-148 528.9 1008 39.1
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 3.5e-144 516.9 1015 38.4
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.3e-143 514.2 1024 40.0
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 3.9e-143 513.5 1017 38.3
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.1e-142 511.9 1017 38.1
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 2.3e-140 504.2 1014 37.9
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 2.3e-140 504.2 1012 37.6
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 9.2e-137 492.3 1014 37.4
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.2e-136 491.9 916 39.3
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 1.6e-136 491.5 889 40.4
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 5.1e-135 486.5 1025 38.0
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 4.3e-134 483.4 1012 37.4
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 5.6e-134 483.0 997 38.1
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 7.3e-134 482.6 1023 36.1
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 1.6e-133 481.5 1012 36.3
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 2.0e-131 474.6 1027 36.7
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 4.4e-131 473.4 972 38.0
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.7e-130 471.5 769 42.9
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 3.7e-130 470.3 1055 36.2
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 1.9e-129 468.0 1004 36.9
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 4.1e-129 466.8 1056 36.1
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 4.6e-128 463.4 1007 36.3
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 3.9e-127 460.3 1008 36.0
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 7.3e-126 456.1 1019 35.7
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 4.7e-125 453.4 1027 35.7
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 6.8e-124 449.5 1008 36.2
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 8.9e-124 449.1 994 34.5
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 3.4e-123 447.2 1014 35.9
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 5.8e-123 446.4 780 41.4
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 9.9e-123 445.7 1027 35.9
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 8.4e-122 442.6 1002 35.4
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 1.1e-121 442.2 1009 34.8
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 3.2e-121 440.7 870 39.8
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 3.5e-120 437.2 1005 35.4
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 3.3e-118 430.6 1013 34.8
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.6e-117 428.3 825 38.2
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 2.1e-117 427.9 1011 35.2
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 6.2e-117 426.4 1010 34.4
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 1.5e-115 421.8 998 35.7
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 2.6e-115 421.0 1004 34.6
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 4.9e-114 416.8 1002 34.0
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 4.9e-114 416.8 1010 34.3
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 3.2e-113 414.1 1013 34.6
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 5.4e-113 413.3 1010 34.3
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 5.4e-113 413.3 1015 33.8
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.6e-112 411.8 476 49.8
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.1e-110 405.6 594 43.3
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 2.1e-109 401.4 1013 33.6
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 2.1e-109 401.4 1013 33.6
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 1.4e-108 398.7 1007 33.6
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 5.1e-103 380.2 579 45.9
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 5.1e-103 380.2 886 35.3
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.9e-98 364.4 443 51.9
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 2.9e-98 364.4 243 79.8
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.9e-90 337.8 437 51.0
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 5.5e-89 333.6 961 31.5
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 2.1e-88 331.6 885 32.3
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 2.5e-86 324.7 1012 31.0
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 6.3e-85 320.1 354 50.3
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 3.3e-78 297.7 663 37.7
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 5.7e-78 297.0 889 30.9
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.0e-71 276.2 395 46.6
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 3.0e-71 274.6 1000 29.6
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 1.0e-63 249.6 623 31.0
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 5.7e-62 243.8 1096 28.0
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 1.3e-58 232.6 1021 27.0
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 2.0e-54 218.8 930 26.9
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 2.6e-54 218.4 976 28.0
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.7e-53 215.7 293 49.1
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 4.7e-48 197.6 325 37.5
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 5.7e-46 190.7 247 51.8
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 8.3e-45 186.8 379 41.2
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.8e-44 185.7 434 37.6
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 6.2e-24 117.5 343 31.8
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 5.2e-23 114.4 294 33.7
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 6.8e-23 114.0 182 39.0
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 4.6e-19 101.3 1007 22.6
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 5.8e-14 84.3 131 46.6
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 2.2e-13 82.4 153 41.2
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 3.2e-12 78.6 89 53.9
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 1.7e-10 72.8 113 47.8
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 4.7e-08 64.7 337 22.3
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 8.1e-08 63.9 165 34.5
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 5.2e-07 61.2 202 27.7
Lj2P929T12 Lonicera japonica HOM05D005720 ORTHO05D006984 9.9e-06 57.0 112 36.6


User provided reference genes

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