Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.0e-89 330.5 178 100.0
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.1e-69 266.9 178 79.8
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.9e-69 266.2 178 79.2
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.1e-61 240.4 178 73.0
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 5.4e-61 238.0 178 73.0
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 9.3e-61 237.3 178 72.5
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 9.3e-61 237.3 178 72.5
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.6e-57 226.5 184 68.5
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 6.9e-56 221.1 178 66.9
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 9.0e-56 220.7 175 66.3
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.8e-55 218.0 154 81.2
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 1.6e-52 209.9 178 61.8
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 2.1e-52 209.5 178 64.0
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.1e-52 209.5 178 62.4
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.7e-52 209.1 178 62.4
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 2.7e-52 209.1 178 62.9
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.6e-52 208.4 168 68.5
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.5e-50 203.4 180 62.2
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 1.5e-50 203.4 174 61.5
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 4.3e-50 201.8 175 61.1
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 7.4e-50 201.1 157 70.7
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.6e-49 199.9 171 62.0
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 2.1e-49 199.5 178 62.9
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.1e-49 199.5 170 62.9
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 6.2e-49 198.0 171 62.0
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 8.1e-49 197.6 170 63.5
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.1e-48 197.2 179 56.4
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.1e-48 197.2 180 61.1
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.4e-48 196.1 179 56.4
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 2.4e-48 196.1 180 61.7
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.6e-47 192.6 178 56.2
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.7e-46 189.9 168 58.9
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.7e-46 189.9 168 58.9
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 3.8e-46 188.7 179 55.9
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.9e-46 188.3 179 54.2
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 6.4e-46 188.0 177 57.1
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 8.4e-46 187.6 169 59.2
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 8.4e-46 187.6 168 61.3
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 7.1e-45 184.5 171 56.7
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.6e-44 183.3 171 56.1
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.6e-44 183.3 165 60.0
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 7.9e-44 181.0 174 54.6
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.3e-43 180.3 163 57.7
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.3e-43 180.3 173 53.8
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.3e-43 180.3 174 54.6
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 2.3e-43 179.5 171 54.4
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 5.1e-43 178.3 171 55.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.1e-42 177.2 206 51.5
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 1.1e-42 177.2 178 55.1
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 1.9e-42 176.4 171 53.8
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 3.3e-42 175.6 171 54.4
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 4.3e-42 175.3 171 54.4
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 7.4e-42 174.5 172 53.5
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 9.6e-42 174.1 164 54.3
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.6e-41 173.3 178 60.1
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 2.8e-41 172.6 168 54.8
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 2.8e-41 172.6 166 54.8
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 2.8e-41 172.6 168 54.8
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 3.7e-41 172.2 172 55.2
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 8.2e-41 171.0 175 56.6
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 1.4e-40 170.2 171 52.0
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.4e-40 170.2 167 52.1
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.4e-40 170.2 163 54.0
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 1.4e-40 170.2 163 55.8
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.4e-40 170.2 173 52.0
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 2.4e-40 169.5 196 49.0
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 2.4e-40 169.5 167 55.1
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.1e-40 169.1 135 62.2
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 4.0e-40 168.7 162 53.7
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 9.0e-40 167.5 168 55.4
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.2e-39 167.2 146 61.6
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 2.6e-39 166.0 172 51.7
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 3.4e-39 165.6 168 53.0
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 3.4e-39 165.6 154 58.4
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 4.5e-39 165.2 181 50.8
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 4.5e-39 165.2 131 62.6
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 5.8e-39 164.9 153 58.8
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 5.8e-39 164.9 153 58.8
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 2.9e-38 162.5 141 58.2
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 8.4e-38 161.0 165 49.7
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.1e-37 160.6 177 52.5
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 3.2e-37 159.1 179 52.0
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 3.2e-37 159.1 179 51.4
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 4.2e-37 158.7 165 49.1
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 1.2e-36 157.1 135 58.5
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.2e-36 157.1 168 51.2
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.2e-36 157.1 177 48.0
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 2.7e-36 156.0 154 54.5
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 2.7e-36 156.0 173 49.1
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 3.5e-36 155.6 155 56.8
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 7.9e-36 154.5 144 56.9
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.0e-35 154.1 159 52.8
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 1.3e-35 153.7 178 50.6
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.3e-35 153.7 226 43.4
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.8e-35 153.3 155 54.8
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.1e-34 150.6 154 52.6
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.1e-34 150.6 172 46.5
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 1.5e-34 150.2 166 51.2
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.9e-34 149.8 177 46.9
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 7.4e-34 147.9 178 47.2
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 2.2e-33 146.4 175 44.0
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 2.2e-33 146.4 146 55.5
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 3.7e-33 145.6 165 46.1
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 6.3e-33 144.8 164 51.2
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 6.3e-33 144.8 166 51.2
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.1e-32 144.1 222 42.8
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.1e-32 144.1 147 52.4
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.4e-32 143.7 162 52.5
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.8e-32 143.3 84 78.6
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.4e-32 142.9 170 45.9
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 3.1e-32 142.5 177 48.6
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 4.1e-32 142.1 133 61.7
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 5.3e-32 141.7 170 45.9
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 5.3e-32 141.7 170 45.9
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 6.9e-32 141.4 91 76.9
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 9.0e-32 141.0 230 41.3
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.0e-31 139.8 145 55.2
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 5.0e-30 135.2 137 54.7
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 5.0e-30 135.2 154 52.6
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 6.5e-30 134.8 178 46.1
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 6.5e-30 134.8 165 48.5
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 1.2e-28 130.6 181 43.1
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 3.6e-28 129.0 163 46.0
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 3.6e-28 129.0 170 43.5
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 4.6e-28 128.6 178 44.4
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 4.6e-28 128.6 175 44.0
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 2.5e-26 122.9 128 55.5
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.5e-26 122.9 115 58.3
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.7e-25 120.2 259 35.1
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 2.8e-25 119.4 86 64.0
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 4.8e-25 118.6 128 51.6
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 6.3e-25 118.2 142 45.1
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 1.2e-23 114.0 141 44.7
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 3.8e-22 109.0 173 38.2
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.5e-21 106.3 115 57.4
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 2.6e-15 86.3 167 32.3
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 7.7e-15 84.7 174 32.2
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 5.0e-14 82.0 136 38.2
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.4e-13 77.8 84 53.6
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 1.2e-12 77.4 115 47.0
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.6e-12 77.0 75 61.3
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.1e-12 76.6 74 59.5
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 2.7e-12 76.3 74 59.5
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 8.0e-12 74.7 91 48.4
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.8e-11 73.6 74 56.8
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 6.7e-11 71.6 101 46.5
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.7e-09 67.0 155 37.4
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.3e-08 62.0 50 70.0
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 2.2e-06 56.6 61 52.5
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 6.5e-06 55.1 79 48.1
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 6.5e-06 55.1 79 48.1


User provided reference genes

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