Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 2317.3 1169 100.0
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 2233.0 1169 96.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1971.1 1184 83.5
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1853.6 1196 79.0
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1691.8 1183 73.8
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1659.4 1187 71.3
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1623.6 1188 69.3
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1622.1 1191 69.4
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1613.6 1194 69.5
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1605.9 1187 68.6
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1605.1 1189 69.1
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1605.1 1191 68.1
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1603.6 1241 66.9
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1602.4 1189 68.5
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1601.6 1186 68.4
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1600.1 1189 68.0
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1597.4 1172 69.8
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1596.6 1193 68.5
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1594.3 1238 66.8
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1590.9 1188 68.4
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1589.3 1191 68.3
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1585.9 1190 68.4
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1584.7 1185 67.3
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1583.5 1191 67.4
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1582.0 1189 68.1
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1580.5 1191 67.8
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1579.3 1191 67.8
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1577.8 1196 66.6
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1575.1 1190 67.2
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1573.1 1191 68.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1570.4 1189 67.4
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1563.1 1188 67.8
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1560.8 1191 66.8
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1560.4 1186 67.0
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1560.4 1178 67.7
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1559.7 1187 67.4
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1559.7 1194 66.2
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1556.2 1190 66.6
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1556.2 1192 66.3
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1555.8 1183 67.3
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1555.0 1220 66.2
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1555.0 1191 66.2
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1552.3 1184 66.9
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1552.0 1192 66.8
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1552.0 1197 66.3
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1551.2 1192 66.3
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1550.8 1189 67.3
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1549.3 1187 66.1
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1545.8 1239 64.5
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1545.0 1190 65.9
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1544.3 1191 66.0
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1544.3 1190 66.6
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1543.5 1230 65.1
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1541.2 1263 63.3
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1539.2 1189 65.7
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1538.1 1192 65.8
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1536.5 1188 65.2
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1535.8 1192 65.4
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1535.8 1195 66.2
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1533.5 1191 66.2
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1532.3 1193 65.6
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1515.7 1184 65.1
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1514.6 1195 64.6
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1511.9 1189 64.5
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1505.3 1167 66.2
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1505.0 1198 65.1
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1503.8 1187 63.6
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1497.6 1199 64.6
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1492.6 1192 64.4
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1490.7 1206 64.8
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1486.9 1195 63.9
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1481.5 883 84.6
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1478.8 1193 64.4
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1476.8 1187 64.1
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1475.3 1190 64.2
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1468.4 1191 63.1
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1465.7 1193 63.2
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1463.4 1009 72.8
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1462.6 1184 63.8
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1461.4 1247 61.0
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1450.6 1191 63.1
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1441.8 1184 62.8
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1439.1 1184 62.7
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1436.8 1187 62.5
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1431.8 1186 62.4
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1429.1 1195 62.7
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1429.1 1172 63.7
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1424.1 1160 64.0
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1414.8 1186 62.1
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1414.1 1190 61.9
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1410.6 1184 61.9
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1372.5 1023 67.4
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1333.2 1196 58.6
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1312.4 1198 58.7
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 0.0e+00 1286.6 789 82.1
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1280.4 1190 56.8
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 0.0e+00 1274.6 812 80.5
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1272.3 1214 55.9
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1229.2 1045 61.9
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1087.4 968 58.2
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1083.9 1200 49.2
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 8.0e-312 1074.3 1187 51.1
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 8.8e-301 1037.3 1196 47.1
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 1.4e-295 1020.0 889 60.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 7.7e-289 997.7 1195 46.4
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 2.5e-279 966.1 871 59.5
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.4e-261 907.1 592 76.2
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 5.8e-244 848.6 1154 43.9
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 3.2e-202 709.9 685 58.1
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.1e-199 701.4 1260 36.0
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 6.2e-198 695.7 398 88.2
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 9.0e-197 691.8 398 86.4
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 3.0e-184 650.2 474 69.6
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.0e-179 635.2 622 54.8
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 4.1e-173 613.2 605 54.2
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 2.6e-167 594.0 1039 38.7
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.8e-166 590.5 1248 32.6
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.5e-127 461.8 331 68.6
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 2.5e-122 444.5 712 41.6
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.0e-119 434.9 1121 30.3
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 3.3e-106 391.0 259 74.1
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 7.1e-93 346.7 346 53.5
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.8e-80 305.4 275 57.1
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.8e-80 305.4 275 57.1
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.9e-77 295.4 200 74.0
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.7e-68 265.0 164 80.5
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.1e-64 253.1 164 76.2
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 3.1e-56 224.9 207 58.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.6e-55 222.6 179 63.7
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 9.1e-48 196.8 205 52.7
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 6.1e-44 184.1 161 59.0
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.1e-40 173.3 161 54.7
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 4.1e-40 171.4 164 54.3
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.5e-39 168.3 104 75.0
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 4.4e-34 151.4 1208 22.5
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.3e-29 134.0 119 60.5
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.3e-25 123.2 120 51.7
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.7e-25 122.9 120 51.7
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.0e-19 103.6 132 41.7
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.8e-19 102.8 154 42.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 3.7e-17 95.1 158 38.6
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 4.9e-17 94.7 93 50.5
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.2e-15 90.1 123 43.9
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 4.3e-13 81.6 61 63.9
PGSC0003DMG400046841 Solanum tuberosum HOM05D014102 ORTHO05D022958 5.2e-11 74.7 100 45.0
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 6.8e-11 74.3 123 37.4
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 6.8e-11 74.3 256 26.2
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 2.6e-10 72.4 79 44.3
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.6e-10 72.4 175 36.6
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 9.8e-10 70.5 121 38.8
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.1e-08 67.0 47 72.3
CAN.G494.1 Capsicum annuum HOM05D014102 ORTHO05D016168 7.1e-08 64.3 115 40.9
CAN.G134.70 Capsicum annuum HOM05D014102 ORTHO05D016168 3.5e-07 62.0 73 47.9
CAN.G809.47 Capsicum annuum HOM05D014102 ORTHO05D016168 6.0e-07 61.2 69 50.7
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 3.0e-06 58.9 97 39.2
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 8.6e-06 57.4 64 51.6


User provided reference genes

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