Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.2e-132 476.5 240 100.0
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.0e-111 406.0 222 92.8
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.5e-109 399.8 240 86.2
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 6.1e-108 394.4 240 85.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.3e-105 384.4 240 83.8
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.6e-100 369.8 241 80.1
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.2e-99 364.8 240 75.8
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.6e-98 362.5 240 75.4
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.8e-97 359.0 241 75.1
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 4.9e-97 358.2 241 74.7
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 9.2e-96 354.0 241 74.3
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 3.3e-93 345.5 241 73.0
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 9.5e-93 344.0 242 75.2
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 9.8e-82 307.4 240 66.7
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.9e-81 305.8 246 65.0
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 4.9e-81 305.1 242 65.3
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 2.7e-79 299.3 247 61.5
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.5e-79 298.9 241 66.0
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.1e-77 293.9 241 63.9
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.1e-77 293.9 242 63.6
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.6e-76 288.9 258 60.5
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.9e-75 284.3 244 61.9
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 4.4e-74 282.0 236 63.1
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 4.4e-74 282.0 241 61.0
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 7.5e-74 281.2 245 61.2
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-73 280.4 241 61.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-73 280.0 245 60.0
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.9e-73 279.3 244 61.5
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 6.4e-73 278.1 256 57.8
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 8.3e-73 277.7 245 58.0
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.4e-72 276.9 244 61.1
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.2e-72 275.8 241 58.9
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 9.2e-72 274.2 249 58.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 9.2e-72 274.2 236 61.9
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 9.2e-72 274.2 236 61.9
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.1e-71 273.1 247 57.1
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 3.5e-71 272.3 242 59.1
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 4.6e-71 271.9 242 59.5
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 4.6e-71 271.9 241 61.0
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 7.8e-71 271.2 244 57.8
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.0e-70 270.8 241 59.3
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.0e-70 270.8 243 58.4
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.3e-70 269.6 241 60.2
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.9e-70 268.9 240 56.7
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.9e-70 268.9 242 58.7
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.9e-70 268.9 243 60.5
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 8.6e-70 267.7 241 58.9
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 8.6e-70 267.7 246 56.1
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.1e-69 267.3 249 58.6
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.1e-69 267.3 240 57.1
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.1e-69 267.3 235 60.0
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.1e-69 267.3 237 59.9
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.5e-69 266.9 237 58.2
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.9e-69 266.5 251 58.6
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 2.5e-69 266.2 241 58.9
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 3.3e-69 265.8 232 61.2
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.3e-69 265.8 181 72.9
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.3e-69 265.8 243 58.8
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 4.3e-69 265.4 240 57.5
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-68 263.8 238 59.7
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.2e-68 263.8 239 58.6
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.2e-68 263.8 243 56.0
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.2e-68 263.8 243 56.0
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.6e-68 263.5 239 59.0
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.6e-68 263.5 239 59.0
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.6e-68 263.5 237 56.1
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.1e-68 263.1 246 59.8
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.8e-68 262.7 240 59.2
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.8e-68 262.7 249 54.6
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.8e-68 262.7 178 70.8
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.8e-68 262.7 178 70.8
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 3.6e-68 262.3 239 58.2
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 3.6e-68 262.3 175 73.1
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 3.6e-68 262.3 239 58.6
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 3.6e-68 262.3 246 53.7
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.7e-68 261.9 200 65.5
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.7e-68 261.9 178 70.2
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.1e-67 260.8 238 55.0
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.4e-67 260.4 185 68.6
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.4e-67 260.4 235 59.6
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.8e-67 260.0 241 55.6
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 3.1e-67 259.2 185 68.6
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.1e-67 259.2 252 54.4
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 5.2e-67 258.5 237 58.6
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 5.2e-67 258.5 237 58.6
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.8e-67 258.1 246 57.3
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 8.9e-67 257.7 241 55.6
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 2.0e-66 256.5 246 56.9
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.6e-66 256.1 236 58.1
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.4e-66 255.8 248 56.9
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.4e-66 255.8 248 56.9
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 4.4e-66 255.4 176 71.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.8e-66 255.0 178 69.1
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 5.8e-66 255.0 246 53.7
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 7.6e-66 254.6 184 67.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 9.9e-66 254.2 226 59.7
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.2e-65 253.1 242 57.0
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 4.9e-65 251.9 240 55.0
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 6.4e-65 251.5 249 54.2
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-64 250.8 254 52.8
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.1e-64 250.8 240 53.3
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.1e-64 250.8 244 55.3
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.4e-64 250.4 255 52.9
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 4.1e-64 248.8 255 52.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.4e-64 248.4 239 51.5
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 7.1e-64 248.1 247 53.8
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 9.2e-64 247.7 244 54.9
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 3.5e-63 245.7 179 64.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 5.1e-62 241.9 236 55.5
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 6.6e-62 241.5 163 71.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 8.6e-62 241.1 234 54.3
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.5e-61 240.4 244 54.1
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.9e-61 240.0 176 66.5
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.3e-61 239.2 231 58.0
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.2e-60 237.3 259 49.8
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.6e-60 236.9 259 50.2
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 2.1e-60 236.5 242 52.9
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.1e-60 236.5 246 52.8
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.4e-59 233.8 217 58.1
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.4e-59 233.8 151 74.2
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.0e-59 232.3 235 51.5
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.0e-59 232.3 178 61.2
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 6.9e-59 231.5 234 54.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.2e-58 230.7 244 52.9
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-57 226.5 163 66.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.4e-56 223.8 165 63.0
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.9e-56 223.4 232 53.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.2e-55 220.7 172 60.5
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.1e-55 219.9 208 54.3
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 6.0e-55 218.4 172 61.0
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.6e-54 214.9 202 53.5
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.7e-54 214.5 147 69.4
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.3e-53 212.6 192 53.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.6e-52 209.1 217 49.3
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 6.2e-52 208.4 206 52.4
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.1e-51 207.6 163 66.3
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.4e-51 207.2 173 59.0
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-49 199.9 164 62.2
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 3.8e-49 199.1 228 50.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.7e-47 193.0 232 45.3
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.1e-43 179.5 132 62.1
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.9e-39 164.9 147 58.5
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.1e-35 154.5 112 64.3
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 5.8e-34 148.7 205 40.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 7.6e-34 148.3 106 65.1
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 8.4e-33 144.8 150 51.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.8e-30 137.1 191 38.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.5e-29 134.0 172 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.5e-29 133.3 180 38.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.2e-25 120.2 203 35.5
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-20 104.4 76 64.5
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 5.3e-19 99.0 163 35.6
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 5.0e-17 92.4 104 49.0
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 7.2e-16 88.6 86 50.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.1e-15 87.0 97 43.3
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.5e-08 63.5 56 58.9
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 4.2e-08 62.8 56 58.9
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 3.6e-07 59.7 65 43.1


User provided reference genes

Program Settings