Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000453g0120 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.7e-35 150.6 74 100.0
Nitab4.5_0001580g0040 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.0e-26 120.9 73 83.6
Nitab4.5_0006312g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.6e-25 118.2 79 77.2
CAN.G1518.1 Capsicum annuum HOM05D000955 ORTHO05D003340 8.4e-24 113.2 80 72.5
Nitab4.5_0007986g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.1e-23 112.8 78 70.5
Peaxi162Scf00064g00002 Petunia axillaris HOM05D000955 ORTHO05D003340 3.2e-23 111.3 79 72.2
Peaxi162Scf00064g00025 Petunia axillaris HOM05D000955 ORTHO05D003340 2.7e-22 108.2 78 67.9
Solyc12g088850.1 Solanum lycopersicum HOM05D000955 ORTHO05D003340 2.7e-22 108.2 80 66.2
Sopen12g030740 Solanum pennellii HOM05D000955 ORTHO05D003340 2.7e-22 108.2 80 66.2
CAN.G1422.10 Capsicum annuum HOM05D000955 ORTHO05D003340 2.3e-21 105.1 80 66.2
Solyc12g088860.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 1.9e-20 102.1 79 64.6
Sopen12g030750 Solanum pennellii HOM05D000955 ORTHO05D003340 4.3e-20 100.9 78 65.4
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 2.4e-18 95.1 72 63.9
Peaxi162Scf00064g00006 Petunia axillaris HOM05D000955 ORTHO05D003340 9.0e-18 93.2 78 62.8
vmacro21529 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 1.5e-17 92.4 78 53.8
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 7.6e-17 90.1 78 52.6
CAN.G371.28 Capsicum annuum HOM05D000955 ORTHO05D003340 2.9e-16 88.2 79 57.0
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 2.9e-16 88.2 79 53.2
Gorai.005G102900 Gossypium raimondii HOM05D000955 ORTHO05D003340 4.9e-16 87.4 78 51.3
Sopen04g032690 Solanum pennellii HOM05D000955 ORTHO05D003340 6.4e-16 87.0 79 51.9
PGSC0003DMG400007985 Solanum tuberosum HOM05D000955 ORTHO05D003340 8.4e-16 86.7 79 51.9
DCAR_008792 Daucus carota HOM05D000955 ORTHO05D003340 1.9e-15 85.5 77 54.5
COL.COLO4_26485 Corchorus olitorius HOM05D000955 ORTHO05D003340 3.2e-15 84.7 78 51.3
Duzib116G0076 Durio zibethinus HOM05D000955 ORTHO05D003340 3.2e-15 84.7 78 50.0
MBI06_g36647_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 5.4e-15 84.0 78 53.8
Manes.18G035800 Manihot esculenta HOM05D000955 ORTHO05D003340 5.4e-15 84.0 78 52.6
ECA232G3034 Erigeron canadensis HOM05D000955 ORTHO05D003340 7.1e-15 83.6 78 51.3
CSS0029458 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D003340 9.3e-15 83.2 78 50.0
Thecc.08G010100 Theobroma cacao HOM05D000955 ORTHO05D003340 9.3e-15 83.2 78 50.0
DCAR_008793 Daucus carota HOM05D000955 ORTHO05D003340 1.2e-14 82.8 77 54.5
Gohir.D06G015900 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.2e-14 82.8 79 50.6
Gorai.010G018500 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.2e-14 82.8 79 50.6
Sabra14G0021800 Salix brachista HOM05D000955 ORTHO05D003340 1.2e-14 82.8 79 48.1
HanXRQChr09g0267871 Helianthus annuus HOM05D000955 ORTHO05D003340 1.6e-14 82.4 78 51.3
Rhsim07G0229000 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.6e-14 82.4 78 47.4
COL.COLO4_26486 Corchorus olitorius HOM05D000955 ORTHO05D003340 2.1e-14 82.0 78 47.4
Gohir.A06G017600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.1e-14 82.0 79 50.6
Gorai.010G018700 Gossypium raimondii HOM05D000955 ORTHO05D003340 2.1e-14 82.0 79 50.6
MBI02_g02963_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.1e-14 82.0 78 50.0
Potri.014G030500 Populus trichocarpa HOM05D000955 ORTHO05D003340 2.7e-14 81.6 79 49.4
DCAR_008791 Daucus carota HOM05D000955 ORTHO05D003340 3.5e-14 81.3 78 51.3
CAN.G1518.2 Capsicum annuum HOM05D000955 ORTHO05D003340 4.6e-14 80.9 78 50.0
Migut.C00586 Erythranthe guttata HOM05D000955 ORTHO05D003340 7.9e-14 80.1 78 50.0
Gohir.D06G015700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 7.9e-14 80.1 79 48.1
Potri.014G030900 Populus trichocarpa HOM05D000955 ORTHO05D003340 7.9e-14 80.1 78 51.3
Rhsim07G0229400 Rhododendron simsii HOM05D000955 ORTHO05D003340 7.9e-14 80.1 78 44.9
COL.COLO4_26487 Corchorus olitorius HOM05D000955 ORTHO05D003340 1.8e-13 79.0 79 50.6
Lj4C54T13 Lonicera japonica HOM05D000955 ORTHO05D003340 1.8e-13 79.0 78 46.2
Migut.C00587 Erythranthe guttata HOM05D000955 ORTHO05D003340 2.3e-13 78.6 78 48.7
Eucgr.F00233 Eucalyptus grandis HOM05D000955 ORTHO05D003340 2.3e-13 78.6 78 50.0
Rhsim07G0228900 Rhododendron simsii HOM05D000955 ORTHO05D003340 2.3e-13 78.6 76 48.7
Cc10_g04230 Coffea canephora HOM05D000955 ORTHO05D003340 3.0e-13 78.2 78 48.7
Potri.014G030800 Populus trichocarpa HOM05D000955 ORTHO05D003340 3.0e-13 78.2 78 50.0
Aqoxy5G01248 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 6.7e-13 77.0 77 50.6
Eucgr.F00234 Eucalyptus grandis HOM05D000955 ORTHO05D003340 6.7e-13 77.0 78 48.7
Aqoxy6G01348 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 8.7e-13 76.6 78 44.9
Gohir.A06G017700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 8.7e-13 76.6 79 48.1
RcHm_v2.0_Chr5g0048521 Rosa chinensis HOM05D000955 ORTHO05D003340 8.7e-13 76.6 78 51.3
Dinv39322 Davidia involucrata HOM05D000955 ORTHO05D003340 2.5e-12 75.1 75 49.3
Oeu004829.1 Olea europaea HOM05D000955 ORTHO05D003340 3.3e-12 74.7 73 49.3
Sabra14G0021600 Salix brachista HOM05D000955 ORTHO05D003340 3.3e-12 74.7 78 47.4
Sabra14G0021900 Salix brachista HOM05D000955 ORTHO05D003340 3.3e-12 74.7 78 47.4
Os09g0458900 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 4.3e-12 74.3 78 48.7
Hma1.2p1_0718F.1_g208350 Hydrangea macrophylla HOM05D000955 ORTHO05D003340 5.6e-12 73.9 79 41.8
Peaxi162Scf01890g00029 Petunia axillaris HOM05D000955 ORTHO05D003340 5.6e-12 73.9 75 54.7
Prupe.1G437300 Prunus persica HOM05D000955 ORTHO05D003340 5.6e-12 73.9 77 49.4
Rhsim07G0229500 Rhododendron simsii HOM05D000955 ORTHO05D003340 5.6e-12 73.9 76 44.7
Zm00001eb100840 Zea mays HOM05D000955 ORTHO05D003340 7.4e-12 73.6 78 48.7
Os07g0619200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 9.6e-12 73.2 77 44.2
Potri.014G030700 Populus trichocarpa HOM05D000955 ORTHO05D003340 9.6e-12 73.2 79 46.8
Rhsim07G0229100 Rhododendron simsii HOM05D000955 ORTHO05D003340 9.6e-12 73.2 76 44.7
Nn1g04889 Nelumbo nucifera HOM05D000955 ORTHO05D003340 1.3e-11 72.8 79 41.8
Gohir.A06G018100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.6e-11 72.4 79 44.3
Gohir.D06G016000 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.6e-11 72.4 79 44.3
Gohir.D06G016100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.6e-11 72.4 79 45.6
Gorai.010G018600 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.6e-11 72.4 79 44.3
Gorai.010G018800 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.6e-11 72.4 79 44.3
Oeu043559.1 Olea europaea HOM05D000955 ORTHO05D003340 1.6e-11 72.4 76 46.1
Potri.002G127000 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.6e-11 72.4 79 46.8
Gohir.A06G017800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.1e-11 72.0 78 46.2
Manes.18G035900 Manihot esculenta HOM05D000955 ORTHO05D003340 2.1e-11 72.0 78 43.6
HPP92_004112 Vanilla planifolia HOM05D000955 ORTHO05D003340 2.8e-11 71.6 77 44.2
unitig_32.g10766 Utricularia gibba HOM05D000939 ORTHO05D000745 3.7e-11 71.2 74 47.3
Nn5g30250 Nelumbo nucifera HOM05D000955 ORTHO05D003340 4.8e-11 70.9 78 41.0
Medtr1g019720 Medicago truncatula HOM05D000955 ORTHO05D003340 8.1e-11 70.1 79 50.6
Gohir.D06G015800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.1e-10 69.7 79 43.0
Sabra02G0099500 Salix brachista HOM05D000955 ORTHO05D003340 1.1e-10 69.7 73 46.6
vmacro04455 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 1.1e-10 69.7 78 43.6
Medtr1g019715 Medicago truncatula HOM05D000955 ORTHO05D003340 1.4e-10 69.3 79 50.6
Aqoxy5G01247 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 1.8e-10 68.9 77 45.5
Gohir.D02G091750 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.8e-10 68.9 73 43.8
Psat6g013520 Pisum sativum HOM05D000955 ORTHO05D003340 1.8e-10 68.9 79 50.6
SalBow5G1664 Salvia bowleyana HOM05D000955 ORTHO05D003340 2.4e-10 68.6 77 42.9
SalBow5G5547 Salvia bowleyana HOM05D000955 ORTHO05D003340 2.4e-10 68.6 77 42.9
TPR.G17546 Trifolium pratense HOM05D000955 ORTHO05D003340 2.4e-10 68.6 79 49.4
Psat6g013720 Pisum sativum HOM05D000955 ORTHO05D003340 3.1e-10 68.2 80 48.8
Eucgr.F00235 Eucalyptus grandis HOM05D000955 ORTHO05D003340 4.0e-10 67.8 67 50.7
Phvul.009G064500 Phaseolus vulgaris HOM05D000955 ORTHO05D003340 4.0e-10 67.8 78 47.4
CDE10G0233 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 5.3e-10 67.4 77 45.5
Ca_13297_v3 Cicer arietinum L. HOM05D000955 ORTHO05D003340 6.9e-10 67.0 79 50.6
Migut.K00765 Erythranthe guttata HOM05D000955 ORTHO05D003340 6.9e-10 67.0 75 40.0
FAN20G1846 Fragaria x ananassa HOM05D000955 ORTHO05D003340 6.9e-10 67.0 78 46.2
CDE08G0020 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 9.0e-10 66.6 73 46.6
Migut.H00440 Erythranthe guttata HOM05D000955 ORTHO05D003340 9.0e-10 66.6 77 41.6
Aqoxy5G01246 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 1.2e-09 66.2 78 39.7
FvH4_2g34550 Fragaria vesca HOM05D000955 ORTHO05D003340 1.2e-09 66.2 78 46.2
Os03g0395200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 1.2e-09 66.2 78 42.3
TPR.G10919 Trifolium pratense HOM05D000955 ORTHO05D003340 1.2e-09 66.2 79 45.6
unitig_748.g8402 Utricularia gibba HOM05D000955 ORTHO05D003340 1.2e-09 66.2 74 41.9
DCAR_010900 Daucus carota HOM05D000955 ORTHO05D003340 1.5e-09 65.9 78 41.0
FAN15G0770 Fragaria x ananassa HOM05D000955 ORTHO05D003340 1.5e-09 65.9 78 46.2
TPR.G17533 Trifolium pratense HOM05D000955 ORTHO05D003340 1.5e-09 65.9 79 48.1
RcHm_v2.0_Chr6g0307621 Rosa chinensis HOM05D000955 ORTHO05D003340 2.0e-09 65.5 78 46.2
RcHm_v2.0_Chr6g0307791 Rosa chinensis HOM05D000955 ORTHO05D003340 2.0e-09 65.5 78 46.2
arahy.Tifrunner.gnm1.ann1.LA24B5 Arachis hypogaea HOM05D000955 ORTHO05D003340 2.6e-09 65.1 79 49.4
Lsat_1_v5_gn_4_125520 Lactuca sativa HOM05D000955 ORTHO05D003340 2.6e-09 65.1 73 41.1
Psat6g013560 Pisum sativum HOM05D000955 ORTHO05D003340 2.6e-09 65.1 79 46.8
CDE06G0816 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 3.4e-09 64.7 78 43.6
CDE10G0229 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 3.4e-09 64.7 77 45.5
Manes.18G036000 Manihot esculenta HOM05D000955 ORTHO05D003340 3.4e-09 64.7 77 40.3
Zm00001eb109460 Zea mays HOM05D000955 ORTHO05D003340 3.4e-09 64.7 80 41.2
MSTRG.3423 Avicennia marina HOM05D000955 ORTHO05D003340 4.5e-09 64.3 76 39.5
FAN27G2801 Fragaria x ananassa HOM05D000955 ORTHO05D003340 4.5e-09 64.3 78 44.9
Cpa.g.sc49.7 Carica papaya HOM05D000955 ORTHO05D003340 5.8e-09 63.9 78 43.6
Glyma.06G039400 Glycine max HOM05D000955 ORTHO05D003340 5.8e-09 63.9 78 47.4
SalBow7G3079 Salvia bowleyana HOM05D000955 ORTHO05D003340 7.6e-09 63.5 67 49.3
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.3e-08 62.8 78 42.3
Dinv39861 Davidia involucrata HOM05D000955 ORTHO05D003340 1.7e-08 62.4 78 38.5
Glyma.04G038300 Glycine max HOM05D000955 ORTHO05D003340 1.7e-08 62.4 78 44.9
RcHm_v2.0_Chr5g0048531 Rosa chinensis HOM05D000955 ORTHO05D003340 1.7e-08 62.4 78 43.6
Psat6g013600 Pisum sativum HOM05D000955 ORTHO05D003340 2.2e-08 62.0 79 44.3
Sopen02g015140 Solanum pennellii HOM05D000955 ORTHO05D003340 2.2e-08 62.0 78 43.6
MBI02_g02964_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.9e-08 61.6 77 41.6
Glyma.17G242800 Glycine max HOM05D000955 ORTHO05D003340 3.8e-08 61.2 78 42.3
SalBow7G0951 Salvia bowleyana HOM05D000955 ORTHO05D003340 3.8e-08 61.2 78 39.7
FAN26G2503 Fragaria x ananassa HOM05D000955 ORTHO05D003340 6.5e-08 60.5 78 41.0
Nn5g30251 Nelumbo nucifera HOM05D000955 ORTHO05D003340 6.5e-08 60.5 78 41.0
Rhsim07G0229200 Rhododendron simsii HOM05D000955 ORTHO05D003340 6.5e-08 60.5 69 42.0
Rhsim07G0229300 Rhododendron simsii HOM05D000955 ORTHO05D003340 6.5e-08 60.5 59 44.1
FAN19G2583 Fragaria x ananassa HOM05D000955 ORTHO05D003340 8.4e-08 60.1 78 41.0
Psat6g013640 Pisum sativum HOM05D000955 ORTHO05D003340 8.4e-08 60.1 79 45.6
Solyc02g065010.1 Solanum lycopersicum HOM05D000955 ORTHO05D003340 8.4e-08 60.1 78 42.3
Glyma.06G039300 Glycine max HOM05D000955 ORTHO05D003340 1.1e-07 59.7 78 42.3
CAN.G165.19 Capsicum annuum HOM05D000955 ORTHO05D003340 1.4e-07 59.3 78 42.3
FAN28G2528 Fragaria x ananassa HOM05D000955 ORTHO05D003340 1.4e-07 59.3 78 41.0
Sabra14G0021700 Salix brachista HOM05D000955 ORTHO05D003340 1.4e-07 59.3 75 40.0
ECA246G3551 Erigeron canadensis HOM05D000955 ORTHO05D003340 1.9e-07 58.9 78 41.0
Lj4C144G12 Lonicera japonica HOM05D002458 ORTHO05D002603 1.9e-07 58.9 78 34.6
RcHm_v2.0_Chr2g0105311 Rosa chinensis HOM05D000955 ORTHO05D003340 1.9e-07 58.9 78 39.7
Nitab4.5_0000728g0030 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.5e-07 58.5 78 39.7
Peaxi162Scf00917g00047 Petunia axillaris HOM05D000955 ORTHO05D003340 2.5e-07 58.5 78 37.2
Cpa.g.sc55.161 Carica papaya HOM05D000955 ORTHO05D003340 3.2e-07 58.2 78 35.9
Psat5g043640 Pisum sativum HOM05D000955 ORTHO05D003340 3.2e-07 58.2 78 42.3
Prupe.7G134600 Prunus persica HOM05D000955 ORTHO05D003340 3.2e-07 58.2 79 35.4
FvH4_1g15920 Fragaria vesca HOM05D000955 ORTHO05D003340 4.2e-07 57.8 78 39.7
Nitab4.5_0002263g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.2e-07 57.8 78 39.7
Peaxi162Scf00917g00031 Petunia axillaris HOM05D000955 ORTHO05D003340 4.2e-07 57.8 78 38.5
Medtr3g101610 Medicago truncatula HOM05D000955 ORTHO05D003340 5.5e-07 57.4 78 41.0
TPR.G28116 Trifolium pratense HOM05D000955 ORTHO05D003340 5.5e-07 57.4 78 41.0
HPP92_004230 Vanilla planifolia HOM05D000955 ORTHO05D003340 5.5e-07 57.4 79 40.5
Zm00001eb373190 Zea mays HOM05D000955 ORTHO05D003340 5.5e-07 57.4 80 41.2
ECA246G2186 Erigeron canadensis HOM05D000955 ORTHO05D003340 7.1e-07 57.0 78 38.5
Manes.13G127500 Manihot esculenta HOM05D000955 ORTHO05D003340 7.1e-07 57.0 78 33.3
Os09g0458800 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 7.1e-07 57.0 74 39.2
PGSC0003DMG400025477 Solanum tuberosum HOM05D000955 ORTHO05D003340 7.1e-07 57.0 78 39.7
Actinidia16499 Actinidia chinensis HOM05D000955 ORTHO05D003340 9.3e-07 56.6 78 37.2
Cfa004009 Carpinus fangiana HOM05D000955 ORTHO05D003340 9.3e-07 56.6 78 34.6
Medtr3g101600 Medicago truncatula HOM05D000955 ORTHO05D003340 1.2e-06 56.2 79 43.0
Oeu043557.1 Olea europaea HOM05D007843 ORTHO05D003639 1.2e-06 56.2 75 40.0
Manes.12G102501 Manihot esculenta HOM05D000955 ORTHO05D003340 1.6e-06 55.8 78 34.6
HanXRQChr05g0137741 Helianthus annuus HOM05D000955 ORTHO05D003340 2.1e-06 55.5 75 37.3
ECA246G1907 Erigeron canadensis HOM05D000955 ORTHO05D003340 2.7e-06 55.1 78 35.9
Gohir.D06G016150 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.7e-06 55.1 70 45.7
SalBow7G1528 Salvia bowleyana HOM05D000955 ORTHO05D003340 2.7e-06 55.1 69 43.5
Gorai.010G019000 Gossypium raimondii HOM05D000955 ORTHO05D003340 3.5e-06 54.7 70 47.1
Migut.H00439 Erythranthe guttata HOM05D000955 ORTHO05D003340 4.6e-06 54.3 78 38.5
HanXRQChr02g0039431 Helianthus annuus HOM05D000955 ORTHO05D003340 4.6e-06 54.3 79 38.0
HanXRQChr15g0473701 Helianthus annuus HOM05D000955 ORTHO05D003340 4.6e-06 54.3 78 33.3
Gohir.A12G070700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 6.0e-06 53.9 78 33.3
Gohir.D12G068600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 6.0e-06 53.9 78 33.3
Gorai.008G075000 Gossypium raimondii HOM05D000955 ORTHO05D003340 6.0e-06 53.9 78 33.3
Rhsim08G0101200 Rhododendron simsii HOM05D000955 ORTHO05D003340 6.0e-06 53.9 75 32.0
TAR625G0252 Trochodendron aralioides HOM05D000283 ORTHO05D003340 6.0e-06 53.9 65 41.5
HanXRQChr12g0378991 Helianthus annuus HOM05D000955 ORTHO05D003340 7.9e-06 53.5 78 35.9
Thecc.01G054500 Theobroma cacao HOM05D000955 ORTHO05D003340 7.9e-06 53.5 78 35.9


User provided reference genes

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