Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000448g0110 Nicotiana tabacum HOM05D000513 ORTHO05D049394 4.5e-35 150.6 71 100.0
CAN.G569.6 Capsicum annuum HOM05D000513 ORTHO05D005786 7.8e-19 96.7 53 86.8
Nitab4.5_0002827g0060 Nicotiana tabacum HOM05D000513 ORTHO05D005786 9.5e-17 89.7 45 93.3
SGA_v2.0_scaffold4G01913 Striga asiatica HOM05D000513 ORTHO05D005786 3.6e-16 87.8 54 75.9
Solyc02g080570.3 Solanum lycopersicum HOM05D000513 ORTHO05D005786 6.2e-16 87.0 54 75.9
MSTRG.7208 Avicennia marina HOM05D000513 ORTHO05D005786 1.8e-15 85.5 46 84.8
Oeu051208.1 Olea europaea HOM05D000513 ORTHO05D005786 1.8e-15 85.5 46 84.8
Sopen02g025270 Solanum pennellii HOM05D000513 ORTHO05D005786 1.8e-15 85.5 54 74.1
Cc09_g01640 Coffea canephora HOM05D000513 ORTHO05D005786 4.0e-15 84.3 54 72.2
Actinidia26911 Actinidia chinensis HOM05D000513 ORTHO05D005786 1.2e-14 82.8 54 72.2
TAR627G1077 Trochodendron aralioides HOM05D000513 ORTHO05D005786 1.2e-14 82.8 54 72.2
vmacro03685 Vaccinium macrocarpon HOM05D000513 ORTHO05D005786 1.2e-14 82.8 54 72.2
Haze_06803 Corylus avellana HOM05D000513 ORTHO05D005786 1.5e-14 82.4 54 74.1
FAN21G2967 Fragaria x ananassa HOM05D000513 ORTHO05D005786 1.5e-14 82.4 54 72.2
FAN25G0071 Fragaria x ananassa HOM05D000513 ORTHO05D005786 1.5e-14 82.4 54 72.2
Rhsim13G0153900 Rhododendron simsii HOM05D000513 ORTHO05D005786 1.5e-14 82.4 54 70.4
RcHm_v2.0_Chr5g0002941 Rosa chinensis HOM05D000513 ORTHO05D005786 1.5e-14 82.4 54 72.2
FvH4_3g02040 Fragaria vesca HOM05D000513 ORTHO05D005786 2.0e-14 82.0 54 72.2
Atru.chr10.2232 Acer truncatum HOM05D000513 ORTHO05D005786 2.6e-14 81.6 54 70.4
Actinidia05513 Actinidia chinensis HOM05D000513 ORTHO05D005786 3.4e-14 81.3 54 70.4
Cfa000217 Carpinus fangiana HOM05D000513 ORTHO05D005786 3.4e-14 81.3 54 70.4
arahy.Tifrunner.gnm1.ann1.J4P8M7 Arachis hypogaea HOM05D000513 ORTHO05D005786 4.4e-14 80.9 54 70.4
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 4.4e-14 80.9 54 70.4
MD05G1347400 Malus domestica HOM05D000513 ORTHO05D005786 5.8e-14 80.5 54 70.4
QL05p073090 Quercus lobata HOM05D000513 ORTHO05D005786 5.8e-14 80.5 54 70.4
ATR0794G058 Amborella trichopoda HOM05D000513 ORTHO05D005786 9.9e-14 79.7 49 77.6
Aqoxy1G02137 Aquilegia oxysepala HOM05D000513 ORTHO05D005786 9.9e-14 79.7 54 68.5
DCAR_027732 Daucus carota HOM05D000513 ORTHO05D005786 9.9e-14 79.7 53 67.9
Lj6g0028016 Lotus japonicus HOM05D000513 ORTHO05D005786 9.9e-14 79.7 54 68.5
Cpa.g.sc152.17 Carica papaya HOM05D000513 ORTHO05D005786 1.3e-13 79.3 54 66.7
CiPaw.10G071400 Carya illinoinensis HOM05D000513 ORTHO05D005786 1.3e-13 79.3 54 68.5
Migut.M01321 Erythranthe guttata HOM05D000513 ORTHO05D005786 1.3e-13 79.3 46 78.3
Glyma.13G204700 Glycine max HOM05D000513 ORTHO05D005786 1.3e-13 79.3 54 68.5
Glyma.15G108000 Glycine max HOM05D000513 ORTHO05D005786 1.3e-13 79.3 54 68.5
Lalb_Chr15g0087621 Lupinus albus HOM05D000513 ORTHO05D005786 1.3e-13 79.3 54 68.5
Manes.16G006900 Manihot esculenta HOM05D000513 ORTHO05D005786 1.3e-13 79.3 46 80.4
Ca_00662_v3 Cicer arietinum L. HOM05D000513 ORTHO05D005786 1.7e-13 79.0 46 80.4
PGR004G0078 Punica granatum HOM05D000513 ORTHO05D005786 1.7e-13 79.0 46 80.4
GSVIVG01012723001 Vitis vinifera HOM05D000513 ORTHO05D005786 1.7e-13 79.0 54 68.5
CSS0023626 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005786 2.2e-13 78.6 54 68.5
Ciclev10014319m.g Citrus clementina HOM05D000513 ORTHO05D005786 2.2e-13 78.6 46 80.4
MELO3C002455.2 Cucumis melo HOM05D000513 ORTHO05D005786 2.2e-13 78.6 46 78.3
CsaV3_1G010740 Cucumis sativus L. HOM05D000513 ORTHO05D005786 2.2e-13 78.6 46 78.3
Eucgr.D01324 Eucalyptus grandis HOM05D000513 ORTHO05D005786 2.2e-13 78.6 44 84.1
Manes.17G038964 Manihot esculenta HOM05D000513 ORTHO05D005786 2.2e-13 78.6 54 66.7
Medtr2g023320 Medicago truncatula HOM05D000513 ORTHO05D005786 2.2e-13 78.6 46 78.3
Prupe.4G020100 Prunus persica HOM05D000513 ORTHO05D005786 2.2e-13 78.6 54 68.5
Hund23468 Selenicereus undatus HOM05D000513 ORTHO05D005786 2.2e-13 78.6 54 68.5
THA.LOC104809504 Tarenaya hassleriana HOM05D000513 ORTHO05D005786 2.2e-13 78.6 46 78.3
Aa31LG1G3050 Aethionema arabicum HOM05D000513 ORTHO05D005786 2.9e-13 78.2 46 80.4
SalBow8G1130 Salvia bowleyana HOM05D000513 ORTHO05D005786 2.9e-13 78.2 46 76.1
Sed0027566 Sechium edule HOM05D000513 ORTHO05D005786 2.9e-13 78.2 46 78.3
TPR.G9945 Trifolium pratense HOM05D000513 ORTHO05D005786 2.9e-13 78.2 46 78.3
TWI63G0257 Tripterygium wilfordii HOM05D000513 ORTHO05D005786 2.9e-13 78.2 54 64.8
Nn1g07138 Nelumbo nucifera HOM05D000513 ORTHO05D005786 3.7e-13 77.8 54 66.7
Zm00001eb070230 Zea mays HOM05D000513 ORTHO05D005786 3.7e-13 77.8 54 64.8
Oeu051893.1 Olea europaea HOM05D000513 ORTHO05D005786 4.9e-13 77.4 46 80.4
Potri.004G014100 Populus trichocarpa HOM05D000513 ORTHO05D005786 4.9e-13 77.4 54 66.7
unitig_748.g7967 Utricularia gibba HOM05D000513 ORTHO05D005786 4.9e-13 77.4 46 78.3
Gohir.D10G012300 Gossypium hirsutum HOM05D000513 ORTHO05D005786 6.4e-13 77.0 54 64.8
Peaxi162Scf01102g00005 Petunia axillaris HOM05D000513 ORTHO05D005786 6.4e-13 77.0 47 80.9
TAR629G0438 Trochodendron aralioides HOM05D000513 ORTHO05D005786 6.4e-13 77.0 54 66.7
VMungo0540G1206 Vigna mungo HOM05D000513 ORTHO05D005786 6.4e-13 77.0 54 64.8
BcaC05g25041 Brassica carinata HOM05D000513 ORTHO05D005786 8.3e-13 76.6 46 80.4
A06p08280 Brassica napus HOM05D000316 ORTHO05D005786 8.3e-13 76.6 46 80.4
A08p33270 Brassica napus HOM05D000513 ORTHO05D005786 8.3e-13 76.6 46 80.4
C05p09830 Brassica napus HOM05D000316 ORTHO05D005786 8.3e-13 76.6 46 80.4
C08p14920 Brassica napus HOM05D000513 ORTHO05D005786 8.3e-13 76.6 46 80.4
BolC5t29724H Brassica oleracea HOM05D000316 ORTHO05D005786 8.3e-13 76.6 46 80.4
BolC8t49121H Brassica oleracea HOM05D000513 ORTHO05D005786 8.3e-13 76.6 46 80.4
BraA06t24027Z Brassica rapa HOM05D000513 ORTHO05D005786 8.3e-13 76.6 46 80.4
BraA08t35246Z Brassica rapa HOM05D000513 ORTHO05D005786 8.3e-13 76.6 46 80.4
CARHR012030 Cardamine hirsuta HOM05D000513 ORTHO05D005786 8.3e-13 76.6 46 80.4
DCAR_008154 Daucus carota HOM05D000513 ORTHO05D005786 8.3e-13 76.6 54 64.8
Thhalv10006631m.g Eutrema salsugineum HOM05D000513 ORTHO05D005786 8.3e-13 76.6 46 80.4
Gohir.A05G170400 Gossypium hirsutum HOM05D000513 ORTHO05D005786 8.3e-13 76.6 54 66.7
Gohir.A10G012640 Gossypium hirsutum HOM05D000513 ORTHO05D005786 8.3e-13 76.6 54 64.8
Gohir.D05G173500 Gossypium hirsutum HOM05D000513 ORTHO05D005786 8.3e-13 76.6 54 66.7
Gorai.009G178700 Gossypium raimondii HOM05D000513 ORTHO05D005786 8.3e-13 76.6 54 66.7
Gorai.011G013800 Gossypium raimondii HOM05D000513 ORTHO05D005786 8.3e-13 76.6 54 64.8
Lj1C1231T2 Lonicera japonica HOM05D000513 ORTHO05D005786 8.3e-13 76.6 54 64.8
MD10G1321800 Malus domestica HOM05D000513 ORTHO05D005786 8.3e-13 76.6 54 68.5
Sp1g10330 Schrenkiella parvula HOM05D000513 ORTHO05D005786 8.3e-13 76.6 46 80.4
GSVIVG01004632001 Vitis vinifera HOM05D000513 ORTHO05D049394 8.3e-13 76.6 51 68.6
Zm00001eb413290 Zea mays HOM05D000513 ORTHO05D005786 8.3e-13 76.6 50 72.0
arahy.Tifrunner.gnm1.ann1.A9I5GT Arachis hypogaea HOM05D000513 ORTHO05D005786 1.1e-12 76.3 54 64.8
Duzib235G0182 Durio zibethinus HOM05D000513 ORTHO05D005786 1.1e-12 76.3 46 76.1
Glyma.07G260500 Glycine max HOM05D000513 ORTHO05D005786 1.1e-12 76.3 46 76.1
HanXRQChr01g0004221 Helianthus annuus HOM05D000513 ORTHO05D005786 1.1e-12 76.3 54 64.8
Lalb_Chr12g0196081 Lupinus albus HOM05D000513 ORTHO05D005786 1.1e-12 76.3 46 76.1
arahy.Tifrunner.gnm1.ann1.4XJ09G Arachis hypogaea HOM05D000513 ORTHO05D005786 1.4e-12 75.9 54 64.8
Hma1.2p1_0749F.1_g212600 Hydrangea macrophylla HOM05D000513 ORTHO05D005786 1.4e-12 75.9 46 78.3
Os08g0191433 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005786 1.4e-12 75.9 46 76.1
SMO239G0166 Selaginella moellendorffii HOM05D000513 ORTHO05D005786 1.4e-12 75.9 54 66.7
EL10Ac8g20060 Beta vulgaris HOM05D000513 ORTHO05D005786 1.9e-12 75.5 54 64.8
Phvul.006G149680 Phaseolus vulgaris HOM05D000513 ORTHO05D005786 1.9e-12 75.5 54 63.0
Sed0006328 Sechium edule HOM05D000513 ORTHO05D005786 1.9e-12 75.5 46 73.9
Thecc.06G220800 Theobroma cacao HOM05D000513 ORTHO05D005786 1.9e-12 75.5 46 73.9
AL1G22860 Arabidopsis lyrata HOM05D000513 ORTHO05D005786 2.4e-12 75.1 46 78.3
AT1G11720 Arabidopsis thaliana HOM05D000513 ORTHO05D005786 2.4e-12 75.1 46 78.3
Carub.0001s1136 Capsella rubella HOM05D000513 ORTHO05D005786 2.4e-12 75.1 46 78.3
HPP92_011147 Vanilla planifolia HOM05D000513 ORTHO05D005786 2.4e-12 75.1 46 73.9
ECA248G2927 Erigeron canadensis HOM05D000513 ORTHO05D005786 3.2e-12 74.7 54 63.0
Os04g0624600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005786 3.2e-12 74.7 54 63.0
Sc17g0007400 Simmondsia chinensis HOM05D000513 ORTHO05D005786 3.2e-12 74.7 56 60.7
COL.COLO4_31779 Corchorus olitorius HOM05D000513 ORTHO05D005786 5.4e-12 73.9 46 73.9
PSO675G1484 Papaver somniferum HOM05D000513 ORTHO05D005786 7.1e-12 73.6 46 71.7
AagrBONN_evm.TU.Sc2ySwM_344.2070 Anthoceros agrestis HOM05D000513 ORTHO05D005786 9.2e-12 73.2 61 55.7
CDE05G3649 Ceratophyllum demersum HOM05D000513 ORTHO05D005786 9.2e-12 73.2 44 77.3
Sabra04G0007000 Salix brachista HOM05D000513 ORTHO05D005786 9.2e-12 73.2 46 73.9
Ah.14g088010 Amaranthus hybridus HOM05D000513 ORTHO05D005786 1.2e-11 72.8 46 73.9
AUR62012712 Chenopodium quinoa HOM05D000513 ORTHO05D005786 1.6e-11 72.4 54 63.0
VMungo1215G0539 Vigna mungo HOM05D000513 ORTHO05D005786 1.6e-11 72.4 46 73.9
Mapoly0055s0049 Marchantia polymorpha HOM05D000513 ORTHO05D005786 2.1e-11 72.0 59 57.6
PSO541G4629 Papaver somniferum HOM05D000513 ORTHO05D005786 2.1e-11 72.0 46 73.9
Psat1g180640 Pisum sativum HOM05D000513 ORTHO05D005786 2.7e-11 71.6 46 71.7
CBR_g950 Chara braunii HOM05D000513 ORTHO05D005786 4.6e-11 70.9 44 75.0
AUR62021943 Chenopodium quinoa HOM05D000513 ORTHO05D005786 4.6e-11 70.9 54 61.1
AUR62044272 Chenopodium quinoa HOM05D000513 ORTHO05D005786 4.6e-11 70.9 54 61.1
CDE05G0345 Ceratophyllum demersum HOM05D000513 ORTHO05D005786 6.0e-11 70.5 43 72.1
Lj4g0014019 Lotus japonicus HOM05D000513 ORTHO05D005786 6.0e-11 70.5 44 75.0
Phvul.003G078800 Phaseolus vulgaris HOM05D000513 ORTHO05D005786 7.8e-11 70.1 54 63.0
Cre13.g579598 Chlamydomonas reinhardtii HOM05D000513 ORTHO05D005786 5.1e-10 67.4 53 56.6
MCO14G300 Micromonas commoda HOM05D000513 ORTHO05D005786 3.6e-08 61.2 55 54.5
PRCOL_00000831 Prasinoderma coloniale HOM05D000513 ORTHO05D005786 4.7e-08 60.8 59 49.2
TWI38G1833 Tripterygium wilfordii HOM05D000513 ORTHO05D005786 6.2e-08 60.5 35 80.0
Sabra11G0003200 Salix brachista HOM05D000355 ORTHO05D000227 1.8e-07 58.9 53 54.7
ClCG03G004710 Citrullus lanatus HOM05D000513 ORTHO05D005786 8.9e-07 56.6 38 65.8
MCO08G155 Micromonas commoda HOM05D000513 ORTHO05D005786 1.2e-06 56.2 50 50.0


User provided reference genes

Program Settings