Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.8e-72 274.6 129 100.0
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.2e-71 271.6 129 97.7
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 5.1e-69 264.2 126 96.8
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 5.1e-69 264.2 126 96.8
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.1e-68 263.1 126 96.0
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 1.9e-68 262.3 126 95.2
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 3.3e-68 261.5 126 96.0
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 9.7e-68 260.0 126 94.4
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 1.6e-67 259.2 126 94.4
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.2e-67 258.8 126 93.7
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.8e-67 258.5 126 93.7
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 2.8e-67 258.5 129 92.2
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 2.8e-67 258.5 126 93.7
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.8e-67 257.7 126 93.7
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 6.3e-67 257.3 126 93.7
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.3e-67 257.3 126 94.4
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 8.2e-67 256.9 126 93.7
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 8.2e-67 256.9 126 93.7
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 8.2e-67 256.9 126 93.7
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-66 256.5 126 93.7
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-66 256.5 126 93.7
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.1e-66 256.5 126 93.7
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 1.1e-66 256.5 126 94.4
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 1.1e-66 256.5 126 92.9
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 92.9
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 93.7
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 92.9
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 93.7
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 92.1
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 92.9
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 92.9
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 92.9
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 93.7
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 3.1e-66 255.0 126 92.9
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.1e-66 254.6 126 92.9
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 4.1e-66 254.6 126 93.7
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 5.3e-66 254.2 126 92.1
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 5.3e-66 254.2 126 92.9
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 5.3e-66 254.2 126 92.1
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 5.3e-66 254.2 126 92.1
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 5.3e-66 254.2 126 92.1
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 6.9e-66 253.8 126 92.1
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 6.9e-66 253.8 126 92.9
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.9e-66 253.8 126 92.9
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 6.9e-66 253.8 126 92.9
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 6.9e-66 253.8 126 91.3
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 9.1e-66 253.4 127 91.3
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 9.1e-66 253.4 124 93.5
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 9.1e-66 253.4 124 93.5
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.1e-66 253.4 126 92.1
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 9.1e-66 253.4 126 92.1
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 9.1e-66 253.4 126 92.1
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.2e-65 253.1 123 92.7
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.9
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 89.7
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.1
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 2.0e-65 252.3 127 92.1
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.1
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.1
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 2.0e-65 252.3 124 92.7
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.1
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 92.1
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 1.0e-64 250.0 126 89.7
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.7e-64 249.2 126 90.5
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 2.9e-64 248.4 126 89.7
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.9e-64 248.4 126 90.5
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 3.8e-64 248.1 126 89.7
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 3.8e-64 248.1 126 90.5
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 6.5e-64 247.3 125 89.6
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.5e-64 247.3 125 89.6
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.5e-64 247.3 125 89.6
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 8.5e-64 246.9 124 90.3
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 8.5e-64 246.9 126 89.7
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 1.9e-63 245.7 124 91.1
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 1.9e-63 245.7 124 91.1
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.9e-63 245.7 125 88.8
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 2.5e-63 245.4 126 88.1
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 3.2e-63 245.0 127 89.8
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 3.2e-63 245.0 126 89.7
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 3.2e-63 245.0 126 89.7
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 3.2e-63 245.0 126 89.7
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 4.2e-63 244.6 124 91.1
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 4.2e-63 244.6 124 91.1
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 4.2e-63 244.6 124 91.1
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 5.5e-63 244.2 126 88.9
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 7.2e-63 243.8 126 88.1
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 1.2e-62 243.0 126 87.3
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.6e-62 242.7 126 88.9
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.6e-62 242.7 124 87.9
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.6e-62 242.7 124 87.9
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 1.6e-62 242.7 126 87.3
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.1e-62 242.3 124 87.9
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 2.1e-62 242.3 126 88.1
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 2.1e-62 242.3 126 87.3
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 2.7e-62 241.9 126 88.1
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 2.7e-62 241.9 126 88.1
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 2.7e-62 241.9 126 88.1
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 2.7e-62 241.9 126 88.1
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 2.7e-62 241.9 126 85.7
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 3.6e-62 241.5 153 76.5
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 4.6e-62 241.1 124 89.5
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 6.1e-62 240.7 124 89.5
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 7.9e-62 240.4 124 89.5
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 87.3
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 87.3
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 1.4e-61 239.6 126 85.7
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 1.4e-61 239.6 127 89.0
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 1.8e-61 239.2 127 87.4
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 3.0e-61 238.4 127 87.4
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 3.0e-61 238.4 127 87.4
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 3.0e-61 238.4 126 86.5
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 3.0e-61 238.4 126 86.5
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 3.9e-61 238.0 124 86.3
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 8.8e-61 236.9 123 88.6
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 1.1e-60 236.5 125 87.2
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.5e-60 236.1 124 87.9
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 2.0e-60 235.7 124 87.9
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 2.0e-60 235.7 112 94.6
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 7.4e-60 233.8 157 72.6
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 9.7e-60 233.4 133 84.2
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 1.3e-59 233.0 124 86.3
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 1.3e-59 233.0 125 83.2
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 3.7e-59 231.5 171 66.7
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 8.2e-59 230.3 126 83.3
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 8.2e-59 230.3 139 80.6
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.1e-58 228.4 126 81.7
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.2e-56 222.2 120 84.2
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 1.1e-55 219.9 124 84.7
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 9.4e-55 216.9 114 87.7
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 9.4e-55 216.9 126 76.2
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 3.6e-54 214.9 112 89.3
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 4.7e-54 214.5 114 86.0
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.0e-53 213.4 126 74.6
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.4e-53 213.0 109 89.0
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.7e-53 210.7 108 90.7
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-48 196.4 149 65.8
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 8.0e-46 187.2 124 74.2
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 3.3e-44 181.8 94 87.2
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.7e-43 179.5 100 85.0
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 2.8e-43 178.7 87 93.1
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 8.2e-43 177.2 82 98.8
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 2.7e-41 172.2 82 96.3
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 2.7e-41 172.2 85 91.8
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 4.5e-41 171.4 136 64.7
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 1.7e-40 169.5 82 95.1
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.5e-39 166.4 82 92.7
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.9e-39 166.0 126 65.1
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.9e-39 166.0 83 92.8
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 1.2e-38 163.3 110 73.6
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 2.7e-38 162.2 77 94.8
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 6.1e-38 161.0 82 87.8
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.0e-37 158.3 177 49.2
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 5.2e-37 157.9 78 92.3
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 3.7e-35 151.8 124 62.1
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 8.3e-35 150.6 129 60.5
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 1.1e-34 150.2 78 88.5
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 2.4e-34 149.1 78 88.5
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 5.5e-31 137.9 73 84.9
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 7.2e-31 137.5 64 98.4
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 4.0e-29 131.7 70 87.1
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 8.3e-27 124.0 125 53.6
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 1.4e-26 123.2 58 94.8
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.8e-26 122.9 123 54.5
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 8.6e-24 114.0 58 91.4
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 3.0e-21 105.5 57 87.7
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.5e-15 85.9 44 88.6
Solyc07g047890.4 Solanum lycopersicum HOM05D004304 ORTHO05D393077 9.5e-07 57.4 69 43.5


User provided reference genes

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