Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 0.0e+00 1140.6 586 100.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 0.0e+00 1096.6 593 93.3
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 2.5e-296 1021.5 585 87.9
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.8e-295 1018.1 589 87.4
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 4.0e-294 1014.2 587 87.6
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.3e-268 929.5 589 81.3
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 3.3e-232 808.5 584 70.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 3.1e-230 802.0 578 70.6
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.0e-221 772.7 587 67.6
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 1.7e-220 769.6 576 68.2
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 5.5e-219 764.6 573 68.1
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 4.6e-218 761.5 585 68.0
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 7.9e-218 760.8 594 66.8
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.7e-215 753.1 573 67.0
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 4.1e-214 748.4 588 65.3
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 6.9e-214 747.7 575 66.3
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 5.0e-212 741.5 593 66.3
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 5.0e-212 741.5 586 65.5
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.1e-211 740.3 581 64.0
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.4e-209 733.4 588 64.5
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.1e-208 730.3 605 64.0
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 2.0e-208 729.6 586 64.5
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 3.3e-208 728.8 589 63.3
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 2.9e-204 715.7 585 63.9
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 5.2e-201 704.9 575 61.9
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.4e-200 701.8 588 62.1
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 9.7e-200 700.7 588 62.1
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.7e-199 699.9 599 62.4
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.7e-199 699.9 588 61.7
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 2.2e-199 699.5 588 61.6
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 4.8e-199 698.4 583 60.5
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 6.3e-199 698.0 575 61.9
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.1e-198 697.2 573 62.8
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.1e-198 695.3 575 62.1
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.2e-197 693.7 584 61.5
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 2.0e-197 693.0 577 61.0
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.0e-196 690.6 582 61.3
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.3e-196 690.3 568 62.1
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 6.5e-196 688.0 508 68.3
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.5e-195 686.0 587 61.5
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 2.5e-195 686.0 508 68.3
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 4.2e-195 685.3 590 61.4
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.2e-195 685.3 586 62.1
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 9.4e-195 684.1 571 59.9
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 9.4e-195 684.1 565 60.9
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.2e-194 683.7 577 60.0
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.1e-194 682.9 586 60.1
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.7e-194 682.6 589 61.0
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.7e-194 682.6 586 59.9
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 3.6e-194 682.2 505 66.7
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.3e-193 679.5 586 61.6
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 8.8e-193 677.6 533 64.2
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.8e-193 677.6 586 61.6
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 7.5e-192 674.5 566 60.2
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 9.8e-192 674.1 547 62.9
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 4.1e-190 668.7 582 60.0
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 2.7e-189 666.0 603 56.6
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 2.7e-189 666.0 593 57.2
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.7e-188 663.3 588 59.9
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.1e-187 660.6 597 58.0
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.1e-187 660.6 584 58.0
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.2e-187 658.7 594 56.4
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 4.2e-187 658.7 591 56.7
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 4.2e-187 658.7 586 57.0
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 5.5e-187 658.3 591 56.9
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.2e-186 657.1 596 56.2
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 1.2e-186 657.1 594 56.4
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 2.1e-186 656.4 583 59.9
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.8e-186 656.0 570 62.3
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 3.6e-186 655.6 593 57.7
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 6.1e-186 654.8 596 56.4
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.4e-185 653.7 593 57.3
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.4e-185 653.7 779 48.5
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.3e-185 652.9 629 56.3
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 3.0e-185 652.5 591 55.8
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 5.2e-185 651.7 567 58.0
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 6.3e-183 644.8 588 56.6
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 6.3e-183 644.8 610 59.0
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.4e-182 643.7 583 58.8
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 5.4e-182 641.7 590 58.1
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 7.0e-182 641.3 604 55.5
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 5.9e-181 638.3 567 59.4
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.7e-180 636.7 586 56.0
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 4.3e-179 632.1 587 55.5
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 2.6e-176 622.9 509 60.3
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.2e-175 619.8 484 64.7
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 6.4e-175 618.2 551 60.8
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.2e-173 614.0 566 57.8
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 4.0e-169 599.0 565 55.4
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.2e-167 593.2 535 56.6
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 7.1e-158 561.6 590 50.8
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.5e-157 559.3 585 52.3
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 6.6e-156 555.1 610 51.6
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.9e-151 539.7 463 62.4
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.1e-150 535.8 341 76.5
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 1.7e-148 530.4 551 49.0
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.5e-147 526.6 596 50.8
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.4e-118 431.0 437 51.5
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 1.3e-114 417.9 386 55.4
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.6e-114 417.5 495 45.7
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 9.0e-113 411.8 507 45.6
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 6.1e-109 399.1 293 68.3
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 9.7e-107 391.7 511 42.9
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 3.1e-105 386.7 350 56.3
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.9e-103 380.2 498 41.2
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 7.5e-83 312.4 168 95.8
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.5e-78 298.1 272 57.4
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 2.2e-74 284.3 201 72.1
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 8.3e-74 282.3 411 42.3
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.4e-73 281.6 203 70.0
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 9.1e-73 278.9 585 32.3
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.1e-69 267.7 282 49.6
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 4.4e-67 260.0 362 36.7
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.9e-63 247.3 302 42.7
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.0e-47 193.4 174 58.6
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 9.5e-38 162.5 123 61.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 8.1e-37 159.5 122 66.4
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 2.1e-32 144.8 97 71.1
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.9e-31 140.6 114 62.3
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.1e-28 132.5 103 63.1
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.0e-27 128.3 249 35.7
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.1e-25 122.5 105 57.1
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.5e-22 112.1 216 35.2
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 5.6e-22 110.2 344 24.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.3e-21 109.0 98 51.0
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 3.6e-21 107.5 87 60.9
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 6.2e-21 106.7 77 59.7
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.8e-20 105.1 79 58.2
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.4e-20 104.8 78 57.7
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.1e-20 104.4 62 79.0
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 4.0e-20 104.0 141 39.7
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.4e-17 94.7 105 48.6
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.2e-16 92.4 183 35.5
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 2.1e-13 81.6 86 41.9
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.5e-11 75.5 138 37.7
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 3.4e-11 74.3 229 27.5
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 3.4e-11 74.3 60 58.3
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 3.8e-10 70.9 115 35.7
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.4e-09 68.9 145 33.8
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 4.2e-09 67.4 58 60.3
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 6.7e-07 60.1 60 53.3


User provided reference genes

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