Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.4e-184 649.4 326 100.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.5e-162 576.2 326 91.4
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 7.5e-125 451.1 295 80.7
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 6.3e-124 448.0 295 79.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.8e-123 446.4 295 79.3
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 7.7e-122 441.0 295 78.6
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.1e-120 437.2 296 77.7
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.7e-97 360.1 280 67.5
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 8.6e-97 357.8 302 65.2
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 9.5e-96 354.4 299 63.9
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.2e-93 347.4 301 64.5
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.5e-93 347.1 310 60.6
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 4.4e-93 345.5 295 65.1
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 5.8e-93 345.1 298 62.8
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 5.8e-93 345.1 264 68.6
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 7.5e-93 344.7 292 62.7
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 9.9e-93 344.4 298 63.8
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 2.2e-92 343.2 264 68.2
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 8.3e-92 341.3 230 76.5
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 5.4e-91 338.6 301 60.5
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 7.1e-91 338.2 296 64.2
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 7.1e-91 338.2 230 75.7
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 9.2e-91 337.8 230 77.0
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 2.1e-90 336.7 230 74.3
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.1e-90 336.7 230 74.3
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 2.1e-90 336.7 272 66.5
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.7e-90 336.3 269 65.8
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 4.6e-90 335.5 299 62.5
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 7.8e-90 334.7 262 65.6
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 7.8e-90 334.7 230 73.9
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 7.8e-90 334.7 299 61.5
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.0e-89 334.3 230 73.9
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.3e-89 334.0 294 60.2
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.7e-89 333.6 262 66.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.7e-89 333.6 301 60.5
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 3.0e-89 332.8 301 61.1
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 3.0e-89 332.8 230 73.5
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-88 330.5 304 59.5
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.5e-88 330.5 288 60.1
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.9e-88 330.1 230 73.5
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 2.5e-88 329.7 234 73.5
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.5e-88 329.7 280 62.9
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 3.3e-88 329.3 301 59.5
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 3.3e-88 329.3 244 70.5
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 4.3e-88 328.9 292 61.0
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 4.3e-88 328.9 301 59.8
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 5.6e-88 328.6 234 73.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 7.3e-88 328.2 235 71.5
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 9.5e-88 327.8 262 67.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 9.5e-88 327.8 297 60.3
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 9.5e-88 327.8 231 74.0
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.2e-87 327.4 299 59.2
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.6e-87 327.0 290 62.1
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.6e-87 327.0 290 62.1
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 2.1e-87 326.6 232 72.4
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.1e-87 326.6 304 58.6
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.1e-87 326.6 282 62.8
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.1e-87 326.6 299 59.2
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 2.8e-87 326.2 295 61.7
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.8e-87 326.2 304 58.6
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 2.8e-87 326.2 280 63.2
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 4.7e-87 325.5 231 72.7
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 8.1e-87 324.7 230 71.7
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.1e-87 324.7 299 59.2
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 8.1e-87 324.7 234 72.6
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.8e-86 323.6 286 60.8
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 2.4e-86 323.2 294 60.9
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.4e-86 323.2 258 66.3
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 3.1e-86 322.8 251 68.5
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 8.9e-86 321.2 228 73.2
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 8.9e-86 321.2 292 60.6
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.2e-85 320.9 230 70.9
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.3e-84 317.4 300 59.0
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.3e-84 317.4 302 59.6
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.7e-84 317.0 230 72.2
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 2.9e-84 316.2 230 70.0
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.8e-84 315.8 288 59.7
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 3.8e-84 315.8 299 57.9
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 6.4e-84 315.1 265 63.8
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.4e-84 315.1 302 58.6
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 6.4e-84 315.1 232 69.8
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 8.4e-84 314.7 297 59.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 8.4e-84 314.7 297 59.9
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.4e-83 313.9 230 70.9
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 3.2e-83 312.8 230 70.4
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 5.4e-83 312.0 230 70.4
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 5.4e-83 312.0 230 70.4
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 5.4e-83 312.0 230 70.4
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 5.4e-83 312.0 232 70.3
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 7.1e-83 311.6 230 70.0
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 9.2e-83 311.2 230 70.0
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.2e-82 310.8 230 69.1
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.2e-82 310.8 230 70.9
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.6e-82 310.5 230 70.4
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.5e-82 309.3 230 69.1
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 7.8e-82 308.1 271 58.7
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.8e-82 308.1 230 69.6
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 8.7e-81 304.7 230 68.7
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 6.2e-79 298.5 265 58.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 8.1e-79 298.1 280 56.4
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 4.0e-78 295.8 230 67.0
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 5.2e-78 295.4 304 54.6
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 5.2e-78 295.4 230 65.7
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.7e-76 290.4 264 58.3
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 4.9e-76 288.9 230 63.5
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.4e-76 288.5 230 63.9
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.7e-73 280.4 201 74.1
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.3e-73 280.0 230 63.9
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 5.1e-73 278.9 240 62.1
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.9e-72 276.9 201 70.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 2.5e-72 276.6 205 71.2
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.1e-71 273.5 246 61.4
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 3.6e-71 272.7 229 62.9
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.0e-70 269.2 233 60.5
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 6.9e-70 268.5 200 69.5
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.5e-69 267.3 201 66.7
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 9.9e-69 264.6 193 71.5
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.7e-68 263.8 201 67.7
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 5.4e-67 258.8 230 60.9
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 7.1e-67 258.5 228 60.1
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.7e-66 256.5 241 58.5
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.5e-66 256.1 187 72.2
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 6.0e-66 255.4 201 66.2
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 3.9e-65 252.7 227 59.9
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 5.1e-65 252.3 238 57.6
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.6e-64 248.8 201 63.7
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 9.6e-64 248.1 232 60.3
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.4e-62 243.4 197 65.5
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.4e-62 243.4 234 56.4
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 6.9e-62 241.9 184 67.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.8e-57 227.3 219 57.5
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.0e-57 226.5 188 66.5
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.9e-56 223.8 292 47.3
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.4e-51 207.6 236 49.2
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.9e-51 207.2 165 67.3
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.5e-51 206.8 183 61.2
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 3.2e-51 206.5 229 49.3
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 6.3e-47 192.2 129 72.1
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.1e-46 189.5 199 53.3
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 5.9e-45 185.7 146 65.1
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.0e-44 182.6 166 59.0
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-43 181.4 136 69.1
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.2e-35 152.1 153 54.9
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.2e-35 152.1 153 54.9
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 7.2e-35 152.1 177 51.4
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.4e-32 142.1 114 63.2
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 6.3e-31 139.0 134 54.5
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 6.5e-28 129.0 102 66.7
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.5e-27 125.9 102 64.7
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 9.4e-27 125.2 102 64.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.6e-26 124.4 85 71.8
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.6e-26 123.2 102 62.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.6e-24 117.1 98 61.2
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 8.2e-23 112.1 169 42.6
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.2e-19 100.1 211 32.7
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.2e-18 98.2 90 56.7
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 7.5e-16 89.0 53 83.0
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-12 78.6 47 83.0
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 6.5e-12 75.9 46 84.8
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 8.5e-12 75.5 44 79.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 9.4e-11 72.0 44 72.7
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 3.6e-10 70.1 46 80.4
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 3.6e-10 70.1 49 75.5
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.5e-08 64.7 47 66.0
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.8e-06 57.8 242 25.6
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.1e-06 57.0 51 56.9


User provided reference genes

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