Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 4.3e-141 504.6 247 100.0
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 5.5e-128 461.1 241 91.3
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.1e-125 453.4 238 91.2
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.3e-125 451.8 241 90.0
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 5.7e-125 451.1 241 89.2
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.8e-124 448.0 241 89.2
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 3.4e-122 441.8 241 88.4
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 5.3e-115 417.9 244 84.8
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.4e-112 409.8 237 86.1
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.6e-98 363.2 242 69.4
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.0e-97 360.5 241 72.2
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 5.2e-94 348.2 241 69.7
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 3.4e-93 345.5 242 69.0
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 5.7e-93 344.7 241 68.0
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.3e-92 343.6 241 67.6
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.7e-92 343.2 241 68.0
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 3.7e-92 342.0 241 68.9
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.4e-91 339.3 244 68.0
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.0e-90 336.3 241 67.2
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 5.9e-90 334.7 243 65.4
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.7e-89 333.2 240 67.1
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 2.2e-89 332.8 185 86.5
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 2.2e-89 332.8 280 61.4
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.9e-89 332.4 241 63.5
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.0e-89 331.6 241 64.3
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 5.0e-89 331.6 243 64.2
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.9e-88 329.7 245 64.9
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.5e-88 329.3 242 65.7
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 3.2e-88 328.9 245 64.9
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 5.5e-88 328.2 242 64.0
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.6e-87 326.6 241 64.7
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 2.7e-87 325.9 244 66.4
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.4e-86 323.6 241 63.9
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.8e-86 323.2 255 62.7
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.3e-86 322.8 241 63.5
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 4.0e-86 322.0 241 65.6
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 4.0e-86 322.0 242 65.7
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 1.2e-85 320.5 244 64.8
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 2.0e-85 319.7 242 63.2
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 2.6e-85 319.3 241 63.9
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 7.5e-85 317.8 246 65.0
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 9.8e-85 317.4 244 63.1
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.8e-85 317.4 244 63.1
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.8e-85 317.4 244 63.1
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.7e-84 316.6 244 62.7
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.2e-84 316.2 242 62.0
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.2e-84 316.2 241 62.7
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 2.2e-84 316.2 278 57.2
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.2e-84 316.2 241 61.8
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.8e-84 315.8 244 62.7
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.8e-84 315.8 235 63.8
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 6.3e-84 314.7 242 60.7
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.3e-84 314.7 246 62.2
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.1e-83 313.9 241 61.8
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.4e-83 313.5 263 58.6
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 5.4e-83 311.6 241 63.5
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 5.4e-83 311.6 205 70.7
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 5.4e-83 311.6 164 89.0
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 2.0e-82 309.7 239 63.2
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 3.5e-82 308.9 241 61.8
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 7.7e-82 307.8 241 60.6
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.0e-81 307.4 264 55.7
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.0e-81 307.4 245 60.0
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.0e-81 307.4 241 61.8
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.3e-81 307.0 241 61.0
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.7e-81 306.6 242 59.9
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.7e-81 306.6 241 62.7
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.7e-81 306.6 239 61.9
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.9e-81 305.8 241 60.2
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 3.8e-81 305.4 242 60.3
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 6.6e-81 304.7 241 60.2
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 8.6e-81 304.3 202 68.3
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.5e-80 303.5 241 60.2
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.9e-80 303.1 308 53.9
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 3.3e-80 302.4 241 59.8
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 7.2e-80 301.2 238 61.3
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.6e-79 300.1 238 61.3
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.6e-79 298.9 244 59.4
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 8.0e-79 297.7 241 59.3
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.8e-78 296.6 241 59.3
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.8e-78 296.6 217 64.5
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.3e-78 296.2 258 58.1
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.0e-78 295.4 237 60.3
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 1.5e-77 293.5 242 57.0
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 4.4e-77 292.0 283 52.7
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.7e-76 288.9 151 94.0
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.9e-76 288.5 191 68.6
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.9e-76 288.5 191 68.6
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.2e-74 283.9 247 57.1
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 4.6e-74 282.0 184 69.6
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.3e-73 280.4 243 56.8
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 6.6e-73 278.1 239 58.2
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 6.6e-73 278.1 241 56.0
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.3e-72 275.4 256 56.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 8.0e-71 271.2 213 62.0
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 2.3e-70 269.6 200 61.5
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.5e-69 266.9 184 68.5
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 9.8e-69 264.2 219 58.9
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 9.8e-69 264.2 243 53.5
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.1e-67 260.8 243 53.1
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 3.5e-66 255.8 183 65.0
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.7e-65 253.4 241 53.1
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.1e-64 250.8 287 48.4
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 5.2e-62 241.9 130 90.0
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.7e-60 236.9 205 56.6
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 9.2e-59 231.1 203 55.2
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.0e-57 227.6 196 59.2
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.7e-57 226.9 207 55.1
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.6e-55 220.3 247 49.8
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.1e-51 205.7 146 63.7
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 2.7e-50 203.0 204 51.5
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 4.6e-50 202.2 174 58.6
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 7.8e-50 201.4 180 54.4
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.9e-48 196.8 170 58.8
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.9e-48 196.8 191 51.3
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 4.3e-48 195.7 248 41.9
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.6e-47 193.7 254 42.9
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 2.8e-47 193.0 187 52.4
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 2.4e-46 189.9 196 44.9
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 3.4e-45 186.0 149 61.7
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.3e-44 184.1 166 57.2
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 7.1e-43 178.3 200 47.0
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.1e-43 178.3 225 46.2
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.3e-41 174.1 125 61.6
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.8e-39 166.4 125 61.6
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.4e-38 164.1 122 61.5
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.0e-37 160.2 200 45.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 4.4e-37 159.1 126 58.7
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.7e-34 149.8 132 61.4
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 7.9e-34 148.3 116 60.3
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.9e-32 143.7 72 91.7
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.6e-32 141.4 86 74.4
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.8e-31 139.8 101 64.4
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.8e-31 139.8 156 46.8
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.6e-31 139.4 101 64.4
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 8.1e-31 138.3 101 63.4
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 8.1e-31 138.3 204 38.2
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.1e-31 138.3 239 38.1
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 4.0e-30 136.0 98 61.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.0e-25 121.3 337 27.6
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 6.7e-25 118.6 203 33.5
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 2.5e-24 116.7 204 35.3
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.7e-23 112.8 56 89.3
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-22 111.3 67 67.2
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.4e-22 110.9 67 70.1
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.0e-21 107.1 67 65.7
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.5e-20 102.1 81 63.0
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 1.1e-19 101.3 80 58.8
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 6.0e-18 95.5 90 56.7
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 7.4e-16 88.6 59 64.4
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.3e-15 87.8 82 56.1
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 1.1e-14 84.7 63 60.3
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 3.8e-12 76.3 122 36.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.4e-11 74.3 59 57.6
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 1.2e-10 71.2 42 76.2
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 3.0e-09 66.6 68 50.0
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 3.0e-09 66.6 88 44.3
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.1e-08 64.7 48 62.5
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 3.3e-08 63.2 76 46.1
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 4.1e-06 56.2 147 28.6
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 9.0e-06 55.1 67 44.8


User provided reference genes

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