Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 0.0e+00 1258.8 661 100.0
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 0.0e+00 1221.5 662 97.1
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 0.0e+00 1109.7 690 85.4
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 0.0e+00 1107.8 689 85.8
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 0.0e+00 1085.5 690 83.3
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 8.7e-298 1026.5 644 85.1
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 4.2e-292 1007.7 690 77.5
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 2.1e-291 1005.4 690 77.2
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 2.9e-285 984.9 692 76.2
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 8.5e-269 930.2 692 70.5
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 1.0e-266 923.3 693 69.6
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.3e-264 916.4 686 70.6
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 9.1e-263 910.2 692 69.9
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 6.1e-259 897.5 692 69.2
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 6.8e-258 894.0 692 67.5
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 6.8e-258 894.0 693 69.6
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.5e-257 892.9 692 67.9
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 2.2e-256 889.0 691 67.0
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 1.1e-252 876.7 706 65.3
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 5.5e-252 874.4 689 66.5
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.2e-251 873.2 687 66.5
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 4.0e-250 868.2 672 68.3
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 2.2e-248 862.4 692 65.2
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 3.7e-248 861.7 711 64.1
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 3.2e-247 858.6 691 64.5
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 3.2e-247 858.6 692 65.5
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 3.2e-247 858.6 694 65.0
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 5.4e-247 857.8 692 64.2
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 7.0e-247 857.4 688 65.8
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 9.2e-247 857.1 689 65.5
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 1.2e-246 856.7 690 65.5
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 1.2e-246 856.7 800 59.4
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 2.3e-245 852.4 687 64.5
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 1.5e-244 849.7 698 63.8
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 1.5e-244 849.7 692 66.2
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 1.9e-244 849.4 687 64.8
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.6e-243 846.3 646 69.2
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 2.1e-243 845.9 672 69.0
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.7e-243 844.7 639 72.1
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 8.0e-243 844.0 689 63.1
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.3e-242 842.4 690 63.2
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 5.2e-242 841.3 690 63.0
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 2.0e-241 839.3 688 65.1
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 7.5e-241 837.4 688 64.1
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.7e-240 836.3 687 64.2
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.9e-240 834.7 690 62.9
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 1.4e-239 833.2 692 63.4
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 3.2e-239 832.0 690 63.5
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 5.4e-239 831.2 694 63.4
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 7.0e-239 830.9 712 62.5
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.6e-238 829.7 686 63.7
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 1.6e-238 829.7 687 63.2
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 1.0e-237 827.0 722 61.9
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.7e-237 826.2 686 63.3
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 3.0e-237 825.5 686 63.7
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 3.0e-237 825.5 691 64.7
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.5e-236 822.4 689 62.0
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 4.3e-236 821.6 803 57.7
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.1e-235 819.3 689 62.0
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 6.2e-235 817.8 691 63.8
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 4.0e-234 815.1 686 61.8
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 5.2e-234 814.7 694 60.5
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 1.2e-233 813.5 683 63.5
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.0e-233 812.8 689 62.1
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 4.4e-233 811.6 691 63.1
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 2.4e-231 805.8 675 63.0
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 2.4e-231 805.8 687 62.6
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 5.4e-231 804.7 658 63.4
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 9.2e-231 803.9 712 61.8
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.2e-230 803.5 687 62.3
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 2.7e-230 802.4 689 62.3
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 4.6e-230 801.6 687 61.3
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.3e-229 800.0 644 64.6
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.1e-229 798.1 712 61.5
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 8.6e-229 797.3 685 61.0
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 8.9e-226 787.3 698 60.6
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 4.4e-225 785.0 687 62.2
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 5.8e-225 784.6 698 60.5
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 5.8e-225 784.6 689 61.5
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 7.6e-225 784.3 685 61.2
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 9.9e-225 783.9 745 58.8
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 1.4e-223 780.0 672 62.2
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 4.1e-223 778.5 694 60.1
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 1.6e-222 776.5 672 62.2
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.3e-221 773.5 608 67.8
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 8.6e-221 770.8 684 60.7
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.6e-220 768.1 693 58.7
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 2.8e-219 765.8 676 60.5
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 3.6e-219 765.4 691 58.6
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 4.7e-219 765.0 686 58.5
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 2.4e-218 762.7 657 60.9
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 4.0e-218 761.9 699 57.7
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.5e-217 760.0 686 58.3
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 2.0e-217 759.6 686 58.6
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 2.0e-217 759.6 668 61.1
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.0e-217 759.6 691 58.0
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.6e-217 759.2 691 57.7
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.4e-215 753.4 613 65.6
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 1.9e-215 753.1 691 58.2
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 5.4e-215 751.5 663 61.1
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 3.5e-214 748.8 646 61.9
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 6.6e-213 744.6 691 57.3
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 3.3e-212 742.3 643 60.5
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 7.3e-212 741.1 691 57.0
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 9.6e-212 740.7 643 62.7
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 8.1e-211 737.6 691 56.4
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 6.9e-210 734.6 693 57.6
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 6.4e-208 728.0 691 55.9
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 6.4e-208 728.0 685 57.2
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 8.4e-208 727.6 694 57.9
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 3.2e-207 725.7 729 55.1
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 4.2e-207 725.3 693 57.1
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 5.4e-207 724.9 704 56.1
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 9.3e-207 724.2 691 56.3
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 3.0e-205 719.2 708 55.6
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 3.3e-204 715.7 631 59.4
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 4.3e-204 715.3 703 56.0
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 2.8e-203 712.6 639 58.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 8.1e-203 711.1 645 58.8
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.8e-202 709.9 686 55.2
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 3.1e-202 709.1 680 55.6
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 2.6e-201 706.1 615 61.1
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 3.4e-201 705.7 653 56.8
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 1.7e-200 703.4 653 56.5
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 8.4e-200 701.0 687 54.0
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 1.6e-198 696.8 620 59.8
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 2.1e-198 696.4 647 56.6
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 3.5e-198 695.7 686 56.6
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 5.1e-197 691.8 705 55.2
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.3e-194 681.8 474 74.7
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.5e-193 680.2 691 53.7
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 4.9e-192 675.2 656 55.9
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 1.4e-191 673.7 656 55.5
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 1.4e-191 673.7 656 55.5
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.3e-187 660.6 684 55.3
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 4.6e-182 642.1 731 50.3
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 5.7e-172 608.6 740 48.1
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 5.5e-159 565.5 690 48.3
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 2.2e-155 553.5 536 54.5
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 2.9e-152 543.1 550 55.1
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.7e-129 466.8 563 50.4
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 2.2e-123 447.2 693 40.0
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 8.1e-118 428.7 432 56.0
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 9.2e-106 388.7 356 59.8
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 3.1e-101 373.6 413 51.1
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.4e-98 362.8 320 61.9
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 7.3e-95 352.4 327 59.9
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.5e-92 343.2 361 52.1
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 7.6e-92 342.4 306 58.5
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 8.1e-86 322.4 379 52.2
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 3.3e-79 300.4 307 52.8
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 5.3e-77 293.1 546 38.3
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 6.3e-70 269.6 424 40.3
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.9e-57 226.1 263 51.7
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 5.1e-56 223.4 608 29.9
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 2.0e-55 221.5 284 50.0
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 3.3e-55 220.7 299 45.5
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.2e-54 218.0 156 76.3
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.7e-54 217.2 623 29.2
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 3.1e-53 214.2 383 39.9
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 7.7e-44 183.0 223 50.2
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 4.1e-37 160.6 192 50.0
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 1.7e-35 155.2 193 44.0
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 3.6e-33 147.5 135 56.3
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.8e-32 145.2 194 44.8
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 5.4e-29 133.7 96 68.8
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 2.0e-28 131.7 112 58.9
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.7e-27 128.6 187 42.8
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.5e-26 123.6 150 50.7
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 9.8e-23 112.8 101 61.4
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.3e-22 112.5 83 69.9
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 3.1e-21 107.8 152 46.1
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.6e-17 95.5 163 37.4
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 3.6e-17 94.4 67 71.6
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 1.0e-16 92.8 86 59.3
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 1.4e-16 92.4 105 48.6
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 5.7e-15 87.0 168 39.3
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.9e-12 77.0 118 41.5
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.0e-11 74.7 88 46.6
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 2.5e-10 71.6 49 71.4
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 2.5e-10 71.6 177 31.6
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 8.0e-09 66.6 51 54.9


User provided reference genes

Program Settings