Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 0.0e+00 2010.3 1014 100.0
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 0.0e+00 1749.2 986 90.5
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-246 857.4 577 77.3
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 1.4e-246 857.1 494 88.1
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 2.6e-240 836.3 509 82.1
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 2.8e-231 806.2 489 82.6
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.6e-220 768.5 526 76.4
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 9.8e-216 754.6 466 81.3
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 2.2e-199 700.3 532 67.9
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 6.9e-193 678.7 482 71.8
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 6.4e-191 672.2 485 69.9
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 5.4e-190 669.1 507 67.5
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.2e-189 667.9 527 65.7
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.5e-184 651.0 543 63.2
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 3.4e-184 649.8 487 67.8
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.5e-184 649.4 490 66.3
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 2.9e-183 646.7 509 64.6
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.9e-182 644.0 551 62.1
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 2.4e-182 643.7 530 64.2
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 7.1e-182 642.1 582 60.3
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 1.2e-181 641.3 529 63.3
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.6e-181 641.0 509 65.0
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.6e-181 641.0 488 67.0
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 2.7e-181 640.2 483 67.3
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 4.6e-181 639.4 509 63.3
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 3.0e-180 636.7 509 62.9
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 6.7e-180 635.6 488 66.8
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 6.7e-180 635.6 531 63.1
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 6.7e-180 635.6 489 66.5
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 8.7e-180 635.2 494 65.8
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 1.9e-179 634.0 507 63.7
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.9e-179 634.0 524 63.7
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.9e-179 634.0 511 62.4
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.5e-179 633.6 531 62.5
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 5.6e-179 632.5 517 63.6
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 7.4e-179 632.1 494 65.6
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.3e-178 631.3 550 60.9
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.3e-178 631.3 491 65.6
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 2.8e-178 630.2 491 65.4
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.8e-177 627.5 490 64.9
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 1.8e-177 627.5 490 66.1
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.4e-177 627.1 491 64.8
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 4.0e-177 626.3 517 61.9
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.0e-176 624.0 519 62.8
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.4e-176 623.2 522 63.2
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 7.6e-176 622.1 496 63.1
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.7e-175 620.9 531 62.0
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 3.8e-175 619.8 498 63.7
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 4.9e-175 619.4 488 63.9
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 6.4e-175 619.0 469 67.2
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-174 618.2 488 63.9
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.4e-174 617.1 518 61.4
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 3.2e-174 616.7 486 64.6
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 7.9e-173 612.1 478 66.1
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 1.3e-172 611.3 462 65.2
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.8e-172 610.9 485 64.1
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.8e-172 610.9 496 62.9
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 2.3e-172 610.5 491 65.2
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.5e-171 607.1 548 58.4
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 3.3e-171 606.7 483 64.4
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.6e-171 605.1 483 62.7
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 9.6e-171 605.1 484 63.6
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 6.2e-170 602.4 501 62.3
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 5.3e-169 599.4 580 54.5
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.9e-169 599.0 476 65.5
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 2.0e-168 597.4 488 63.9
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.0e-168 597.4 507 60.9
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 4.5e-168 596.3 488 62.3
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.3e-167 594.7 492 63.2
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.7e-167 594.3 490 62.4
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.8e-167 593.2 493 60.9
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.2e-166 590.1 439 71.1
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 9.3e-166 588.6 489 62.2
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.7e-165 587.0 511 59.5
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 7.9e-165 585.5 489 60.9
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.0e-164 585.1 484 62.4
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.0e-164 583.6 490 61.8
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 7.4e-163 578.9 523 57.7
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 6.3e-162 575.9 513 58.9
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.1e-161 575.1 333 86.5
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.9e-158 564.3 502 58.0
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 2.5e-158 563.9 606 51.0
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 5.5e-158 562.8 484 59.1
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.6e-152 543.9 534 56.9
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.0e-151 542.0 492 56.9
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.2e-151 540.8 495 56.0
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 6.5e-151 539.3 486 57.6
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.5e-150 537.3 321 83.2
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 4.2e-150 536.6 487 55.9
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.6e-149 534.6 342 80.4
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 7.9e-149 532.3 549 54.8
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.2e-146 524.2 417 63.1
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 7.0e-145 519.2 494 56.7
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 1.2e-144 518.5 492 55.5
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 5.9e-144 516.2 490 56.1
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.7e-143 514.6 474 56.5
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.5e-143 512.7 504 54.0
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-142 511.9 502 54.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.2e-142 510.4 479 56.4
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 4.2e-142 510.0 425 59.5
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.4e-140 505.0 491 54.2
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.8e-140 504.6 450 57.8
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.9e-140 503.4 472 54.7
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.5e-139 501.5 389 67.1
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 5.7e-139 499.6 493 53.8
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 7.0e-137 492.7 466 54.9
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-133 481.9 459 54.2
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.0e-133 479.2 400 63.0
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 3.0e-132 477.2 485 54.0
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 4.0e-132 476.9 452 55.1
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.7e-131 473.0 278 83.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.8e-130 469.9 501 50.3
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.5e-126 457.6 542 50.0
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.0e-124 452.2 487 50.7
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.4e-124 451.8 454 54.8
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 6.8e-124 449.5 333 66.4
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.4e-121 441.8 506 47.8
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 3.1e-121 440.7 495 47.1
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.5e-118 431.8 500 47.2
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 2.1e-117 427.9 334 64.1
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.7e-114 418.3 398 51.3
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 2.8e-114 417.5 391 55.0
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.0e-112 411.4 325 66.5
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.5e-110 405.2 394 56.9
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.0e-104 384.8 293 62.8
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.0e-103 380.9 339 60.2
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 2.0e-99 368.2 324 59.3
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 3.0e-95 354.4 418 49.3
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 3.3e-94 350.9 377 48.0
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 7.3e-94 349.7 651 34.9
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.3e-87 328.9 231 63.6
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.3e-86 323.9 243 63.8
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.8e-84 318.5 224 63.4
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 7.6e-75 286.6 159 89.9
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.1e-70 272.7 439 40.5
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 4.3e-70 270.8 580 32.1
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 3.1e-68 264.6 161 75.8
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.3e-63 248.4 272 50.4
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.1e-63 247.3 162 74.1
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 5.5e-57 227.3 331 46.5
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 4.6e-56 224.2 472 31.8
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 1.5e-54 219.2 155 71.6
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 9.6e-54 216.5 126 86.5
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.7e-53 214.5 120 81.7
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.1e-52 213.0 124 79.8
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 1.1e-52 213.0 118 87.3
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.0e-52 211.1 194 51.0
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.0e-52 211.1 124 79.0
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 6.9e-52 210.3 174 59.2
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 2.2e-50 205.3 130 75.4
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-42 179.5 143 69.2
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.8e-39 166.8 118 68.6
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.3e-37 160.6 168 44.6
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.7e-35 153.7 199 43.2
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 2.1e-32 145.6 110 63.6
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-31 142.9 79 91.1
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-29 136.3 108 60.2
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.9e-17 95.9 122 36.9
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 3.2e-17 95.1 67 64.2
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 2.4e-12 79.0 73 57.5
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 4.1e-12 78.2 73 53.4
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 2.5e-09 68.9 55 63.6


User provided reference genes

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