Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000411g0030 Nicotiana tabacum HOM05D001361 ORTHO05D002529 1.5e-26 122.1 62 100.0
Nitab4.5_0000834g0010 Nicotiana tabacum HOM05D001361 ORTHO05D002529 4.4e-26 120.6 62 98.4
CAN.G726.10 Capsicum annuum HOM05D001361 ORTHO05D002529 1.7e-22 108.6 60 86.7
Nitab4.5_0002778g0040 Nicotiana tabacum HOM05D001361 ORTHO05D002529 1.2e-20 102.4 62 75.8
Nitab4.5_0000556g0200 Nicotiana tabacum HOM05D001361 ORTHO05D002529 2.8e-20 101.3 62 74.2
CAN.G137.6 Capsicum annuum HOM05D001361 ORTHO05D002529 3.6e-20 100.9 62 74.2
Solyc08g005230.3 Solanum lycopersicum HOM05D001361 ORTHO05D002529 3.6e-20 100.9 62 74.2
Peaxi162Scf00456g00212 Petunia axillaris HOM05D001361 ORTHO05D002529 4.7e-20 100.5 62 82.3
PGSC0003DMG400015124 Solanum tuberosum HOM05D001361 ORTHO05D002529 6.2e-20 100.1 62 72.6
Sopen08g001260 Solanum pennellii HOM05D001361 ORTHO05D002529 1.0e-19 99.4 62 72.6
SGA_v2.0_scaffold54G19444 Striga asiatica HOM05D001361 ORTHO05D002529 1.9e-16 88.6 64 70.3
EL10Ac6g13158 Beta vulgaris HOM05D001361 ORTHO05D002529 2.4e-16 88.2 62 69.4
Manes.01G189500 Manihot esculenta HOM05D001361 ORTHO05D002529 4.1e-16 87.4 57 75.4
Cfa009024 Carpinus fangiana HOM05D001361 ORTHO05D002529 1.2e-15 85.9 62 64.5
Haze_12055 Corylus avellana HOM05D001361 ORTHO05D002529 1.2e-15 85.9 62 64.5
BcaB07g30695 Brassica carinata HOM05D001361 ORTHO05D002529 2.0e-15 85.1 62 64.5
Eucgr.B03413 Eucalyptus grandis HOM05D001361 ORTHO05D002529 2.0e-15 85.1 65 66.2
Cpa.g.c28586.2 Carica papaya HOM05D001361 ORTHO05D002529 6.0e-15 83.6 61 65.6
Gohir.A13G072100 Gossypium hirsutum HOM05D001361 ORTHO05D002529 6.0e-15 83.6 62 66.1
Gohir.D02G057300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 6.0e-15 83.6 62 66.1
Gohir.D05G291300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 6.0e-15 83.6 62 66.1
Gohir.D13G067800 Gossypium hirsutum HOM05D001361 ORTHO05D002529 6.0e-15 83.6 62 66.1
Gorai.013G077300 Gossypium raimondii HOM05D001361 ORTHO05D002529 6.0e-15 83.6 62 66.1
Oeu017067.2 Olea europaea HOM05D001361 ORTHO05D002529 6.0e-15 83.6 65 64.6
Atru.chr11.1898 Acer truncatum HOM05D001361 ORTHO05D002529 7.8e-15 83.2 61 67.2
AT1G27000 Arabidopsis thaliana HOM05D001361 ORTHO05D002529 7.8e-15 83.2 61 63.9
Gohir.D08G096500 Gossypium hirsutum HOM05D001361 ORTHO05D025695 7.8e-15 83.2 62 66.1
Migut.A01170 Erythranthe guttata HOM05D001361 ORTHO05D002529 1.0e-14 82.8 57 73.7
Sp2g13840 Schrenkiella parvula HOM05D001361 ORTHO05D002529 1.0e-14 82.8 62 62.9
Carub.0001s2397 Capsella rubella HOM05D001361 ORTHO05D002529 1.3e-14 82.4 61 63.9
ClCG01G018850 Citrullus lanatus HOM05D001361 ORTHO05D002529 1.3e-14 82.4 57 66.7
Duzib251G0880 Durio zibethinus HOM05D001361 ORTHO05D002529 1.7e-14 82.0 62 62.9
Sp1g21790 Schrenkiella parvula HOM05D001361 ORTHO05D002529 1.7e-14 82.0 65 61.5
TWI18G1247 Tripterygium wilfordii HOM05D001361 ORTHO05D002529 1.7e-14 82.0 65 61.5
BcaC04g21517 Brassica carinata HOM05D001361 ORTHO05D002529 2.3e-14 81.6 62 61.3
A09p23940 Brassica napus HOM05D001361 ORTHO05D002529 2.3e-14 81.6 62 62.9
C09p30830 Brassica napus HOM05D001361 ORTHO05D002529 2.3e-14 81.6 62 61.3
BolC9t55945H Brassica oleracea HOM05D001361 ORTHO05D002529 2.3e-14 81.6 62 61.3
AUR62028828 Chenopodium quinoa HOM05D001361 ORTHO05D002529 2.3e-14 81.6 62 59.7
Duzib248G0766 Durio zibethinus HOM05D001361 ORTHO05D002529 2.3e-14 81.6 62 62.9
Gohir.D04G084248 Gossypium hirsutum HOM05D001361 ORTHO05D002529 2.3e-14 81.6 62 64.5
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 2.3e-14 81.6 62 64.5
Gorai.006G051200 Gossypium raimondii HOM05D001361 ORTHO05D025695 2.3e-14 81.6 62 64.5
A08p27700 Brassica napus HOM05D001361 ORTHO05D002529 3.0e-14 81.3 63 63.5
C08p22610 Brassica napus HOM05D001361 ORTHO05D002529 3.0e-14 81.3 63 63.5
BolC8t49899H Brassica oleracea HOM05D001361 ORTHO05D002529 3.0e-14 81.3 63 63.5
CSS0023699 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 3.0e-14 81.3 61 60.7
Sed0011652 Sechium edule HOM05D001361 ORTHO05D002529 3.0e-14 81.3 65 60.0
AL1G38520 Arabidopsis lyrata HOM05D001361 ORTHO05D002529 3.9e-14 80.9 61 62.3
MELO3C007764.2 Cucumis melo HOM05D001361 ORTHO05D002529 3.9e-14 80.9 57 64.9
Thhalv10008298m.g Eutrema salsugineum HOM05D001361 ORTHO05D002529 3.9e-14 80.9 65 60.0
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 5.0e-14 80.5 63 63.5
QL03p065510 Quercus lobata HOM05D001361 ORTHO05D002529 5.0e-14 80.5 63 63.5
CSS0049047 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 6.6e-14 80.1 61 59.0
BcaC06g31220 Brassica carinata HOM05D001361 ORTHO05D002529 8.6e-14 79.7 62 59.7
CiPaw.05G139100 Carya illinoinensis HOM05D001361 ORTHO05D002529 8.6e-14 79.7 65 60.0
Migut.E00752 Erythranthe guttata HOM05D001361 ORTHO05D002529 8.6e-14 79.7 62 67.7
Aa31LG2G7530 Aethionema arabicum HOM05D001361 ORTHO05D002529 1.1e-13 79.3 62 59.7
CSS0025195 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.1e-13 79.3 61 59.0
Aa31LG7G8150 Aethionema arabicum HOM05D001361 ORTHO05D002529 1.5e-13 79.0 65 56.9
ATR1120G156 Amborella trichopoda HOM05D001361 ORTHO05D002529 1.5e-13 79.0 64 64.1
BcaC05g26354 Brassica carinata HOM05D001361 ORTHO05D002529 1.5e-13 79.0 62 61.3
C05p23790 Brassica napus HOM05D001361 ORTHO05D002529 1.5e-13 79.0 62 61.3
BolC5t31098H Brassica oleracea HOM05D001361 ORTHO05D002529 1.5e-13 79.0 62 61.3
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 1.5e-13 79.0 63 61.9
GSVIVG01020065001 Vitis vinifera HOM05D001361 ORTHO05D002529 1.5e-13 79.0 65 56.9
Carub.0005s0164 Capsella rubella HOM05D001361 ORTHO05D002529 1.9e-13 78.6 62 58.1
CiPaw.06G081200 Carya illinoinensis HOM05D001361 ORTHO05D002529 1.9e-13 78.6 57 61.4
CsaV3_6G045510 Cucumis sativus L. HOM05D001361 ORTHO05D002529 1.9e-13 78.6 57 63.2
MSTRG.24843 Avicennia marina HOM05D001361 ORTHO05D002529 2.5e-13 78.2 64 64.1
BraA06t27237Z Brassica rapa HOM05D001361 ORTHO05D002529 2.5e-13 78.2 62 59.7
Manes.05G097501 Manihot esculenta HOM05D001361 ORTHO05D002529 2.5e-13 78.2 65 61.5
Thecc.02G354100 Theobroma cacao HOM05D001361 ORTHO05D002529 2.5e-13 78.2 62 58.1
AL5G11920 Arabidopsis lyrata HOM05D001361 ORTHO05D002529 3.3e-13 77.8 62 56.5
BraA08t34705Z Brassica rapa HOM05D001361 ORTHO05D002529 3.3e-13 77.8 63 61.9
CARHR024910 Cardamine hirsuta HOM05D001361 ORTHO05D002529 3.3e-13 77.8 61 57.4
Psat2g144360 Pisum sativum HOM05D001361 ORTHO05D002529 3.3e-13 77.8 61 55.7
PGR102G2437 Punica granatum HOM05D001361 ORTHO05D002529 3.3e-13 77.8 57 59.6
AT2G02730 Arabidopsis thaliana HOM05D001361 ORTHO05D002529 4.3e-13 77.4 62 56.5
MSTRG.12169 Avicennia marina HOM05D001361 ORTHO05D002529 4.3e-13 77.4 57 68.4
Ca_04747_v3 Cicer arietinum L. HOM05D001361 ORTHO05D002529 4.3e-13 77.4 52 67.3
Thhalv10004758m.g Eutrema salsugineum HOM05D001361 ORTHO05D002529 4.3e-13 77.4 62 54.8
Gohir.A12G166300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 4.3e-13 77.4 62 58.1
Gohir.D12G169800 Gossypium hirsutum HOM05D001361 ORTHO05D002529 4.3e-13 77.4 62 58.1
Rhsim12G0130400 Rhododendron simsii HOM05D001361 ORTHO05D002529 4.3e-13 77.4 64 64.1
Sc04g0008420 Simmondsia chinensis HOM05D001361 ORTHO05D002529 4.3e-13 77.4 58 62.1
TPR.G18467 Trifolium pratense HOM05D001361 ORTHO05D002529 4.3e-13 77.4 62 61.3
BcaC06g34044 Brassica carinata HOM05D001361 ORTHO05D002529 5.6e-13 77.0 62 58.1
C07p33340 Brassica napus HOM05D001361 ORTHO05D002529 5.6e-13 77.0 62 58.1
BolC7t43844H Brassica oleracea HOM05D001361 ORTHO05D002529 5.6e-13 77.0 62 58.1
Gohir.D04G022372 Gossypium hirsutum HOM05D001361 ORTHO05D025695 5.6e-13 77.0 61 62.3
vmacro01232 Vaccinium macrocarpon HOM05D001361 ORTHO05D002529 5.6e-13 77.0 57 63.2
Dinv43649 Davidia involucrata HOM05D001361 ORTHO05D002529 7.3e-13 76.6 65 60.0
A06p43520 Brassica napus HOM05D001361 ORTHO05D002529 9.5e-13 76.3 62 58.1
DCAR_028266 Daucus carota HOM05D001361 ORTHO05D002529 9.5e-13 76.3 62 58.1
Potri.010G092700 Populus trichocarpa HOM05D001361 ORTHO05D002529 9.5e-13 76.3 57 59.6
PGR119G1577 Punica granatum HOM05D001361 ORTHO05D002529 9.5e-13 76.3 61 59.0
Actinidia08216 Actinidia chinensis HOM05D001361 ORTHO05D002529 1.2e-12 75.9 65 60.0
A09p40430 Brassica napus HOM05D001361 ORTHO05D002529 1.2e-12 75.9 62 58.1
BraA09t39539Z Brassica rapa HOM05D001361 ORTHO05D002529 1.2e-12 75.9 62 58.1
HanXRQChr17g0538121 Helianthus annuus HOM05D001361 ORTHO05D002529 1.2e-12 75.9 57 63.2
Lalb_Chr04g0256311 Lupinus albus HOM05D001361 ORTHO05D002529 1.2e-12 75.9 65 58.5
arahy.Tifrunner.gnm1.ann1.KTR52G Arachis hypogaea HOM05D001361 ORTHO05D002529 2.1e-12 75.1 65 56.9
Nn4g23060 Nelumbo nucifera HOM05D001361 ORTHO05D002529 2.1e-12 75.1 65 55.4
arahy.Tifrunner.gnm1.ann1.PUF87X Arachis hypogaea HOM05D001361 ORTHO05D002529 2.8e-12 74.7 65 56.9
arahy.Tifrunner.gnm1.ann1.S44JZV Arachis hypogaea HOM05D001361 ORTHO05D002529 2.8e-12 74.7 65 56.9
Phvul.002G065900 Phaseolus vulgaris HOM05D001361 ORTHO05D002529 3.6e-12 74.3 65 56.9
Aqoxy3G03283 Aquilegia oxysepala HOM05D001361 ORTHO05D002529 4.7e-12 73.9 62 58.1
Dinv44088 Davidia involucrata HOM05D001361 ORTHO05D002529 4.7e-12 73.9 65 55.4
Hma1.2p1_0341F.1_g130600 Hydrangea macrophylla HOM05D001361 ORTHO05D002529 4.7e-12 73.9 57 57.9
VMungo1215G2637 Vigna mungo HOM05D001361 ORTHO05D002529 4.7e-12 73.9 64 57.8
arahy.Tifrunner.gnm1.ann1.MZWE21 Arachis hypogaea HOM05D001361 ORTHO05D002529 6.2e-12 73.6 65 55.4
CARHR145160 Cardamine hirsuta HOM05D001361 ORTHO05D002529 8.1e-12 73.2 62 51.6
Glyma.01G042800 Glycine max HOM05D001361 ORTHO05D002529 8.1e-12 73.2 50 68.0
Sabra10G0050900 Salix brachista HOM05D001361 ORTHO05D002529 8.1e-12 73.2 57 57.9
unitig_52.g17200 Utricularia gibba HOM05D001361 ORTHO05D002529 8.1e-12 73.2 57 59.6
Lsat_1_v5_gn_6_3540 Lactuca sativa HOM05D001361 ORTHO05D002529 1.1e-11 72.8 64 60.9
Lj2g0009692 Lotus japonicus HOM05D001361 ORTHO05D002529 1.1e-11 72.8 65 55.4
Potri.008G149000 Populus trichocarpa HOM05D001361 ORTHO05D002529 1.4e-11 72.4 57 57.9
MBI04_g10405_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D002529 1.8e-11 72.0 65 56.9
Lsat_1_v5_gn_3_19241 Lactuca sativa HOM05D001361 ORTHO05D002529 2.3e-11 71.6 64 54.7
PSO591G0091 Papaver somniferum HOM05D001361 ORTHO05D002529 2.3e-11 71.6 60 58.3
HanXRQChr13g0396491 Helianthus annuus HOM05D001361 ORTHO05D002529 4.0e-11 70.9 62 56.5
Atru.chr6.1371 Acer truncatum HOM05D001361 ORTHO05D002529 6.8e-11 70.1 61 63.9
Medtr5g038550 Medicago truncatula HOM05D001361 ORTHO05D002529 6.8e-11 70.1 66 53.0
PSO832G1946 Papaver somniferum HOM05D001361 ORTHO05D002529 8.9e-11 69.7 60 56.7
TAR371G0316 Trochodendron aralioides HOM05D001361 ORTHO05D002529 8.9e-11 69.7 63 54.0
Gorai.008G182400 Gossypium raimondii HOM05D001361 ORTHO05D002529 1.5e-10 68.9 53 58.5
Glyma.02G020800 Glycine max HOM05D001361 ORTHO05D002529 2.0e-10 68.6 50 64.0
MD13G1078200 Malus domestica HOM05D001361 ORTHO05D002529 2.0e-10 68.6 62 54.8
MD16G1077900 Malus domestica HOM05D001361 ORTHO05D002529 2.6e-10 68.2 62 54.8
CSS0018559 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 3.4e-10 67.8 47 61.7
Prupe.1G268900 Prunus persica HOM05D001361 ORTHO05D002529 3.4e-10 67.8 62 51.6
MD05G1007200 Malus domestica HOM05D001361 ORTHO05D002529 4.4e-10 67.4 62 53.2
Gorai.012G030700 Gossypium raimondii HOM05D001361 ORTHO05D025695 1.7e-09 65.5 92 43.5
CSS0039250 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 3.7e-09 64.3 59 50.8
CSS0040349 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 3.7e-09 64.3 59 50.8
CDE02G3302 Ceratophyllum demersum HOM05D001361 ORTHO05D002529 3.7e-09 64.3 64 48.4
Gohir.D11G231540 Gossypium hirsutum HOM05D001361 ORTHO05D025695 3.7e-09 64.3 93 41.9
CANSAT64G0710 Cannabis sativa HOM05D001361 ORTHO05D002529 4.9e-09 63.9 57 56.1
Gohir.D04G027950 Gossypium hirsutum HOM05D001361 ORTHO05D002529 4.9e-09 63.9 93 41.9
THA.LOC104822929 Tarenaya hassleriana HOM05D001361 ORTHO05D002529 6.4e-09 63.5 43 60.5
HPP92_021790 Vanilla planifolia HOM05D001361 ORTHO05D002529 2.4e-08 61.6 62 50.0
THA.LOC104822101 Tarenaya hassleriana HOM05D001361 ORTHO05D002529 3.2e-08 61.2 39 64.1
Actinidia03190 Actinidia chinensis HOM05D001361 ORTHO05D002529 4.1e-08 60.8 39 69.2
AUR62005733 Chenopodium quinoa HOM05D001361 ORTHO05D002529 4.1e-08 60.8 43 62.8
RcHm_v2.0_Chr4g0440531 Rosa chinensis HOM05D001361 ORTHO05D002529 7.1e-08 60.1 62 53.2
Zm00001eb316450 Zea mays HOM05D001361 ORTHO05D002529 7.1e-08 60.1 62 45.2
COL.COLO4_23041 Corchorus olitorius HOM05D001361 ORTHO05D002529 9.2e-08 59.7 42 61.9
TAR629G0132 Trochodendron aralioides HOM05D001361 ORTHO05D002529 9.2e-08 59.7 65 49.2
CSS0020990 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 2.7e-07 58.2 39 61.5
CDE09G0127 Ceratophyllum demersum HOM05D001361 ORTHO05D002529 3.5e-07 57.8 64 43.8
FvH4_4g31870 Fragaria vesca HOM05D001361 ORTHO05D002529 3.5e-07 57.8 56 60.7
FAN07G1559 Fragaria x ananassa HOM05D001361 ORTHO05D002529 3.5e-07 57.8 56 58.9
FAN17G1883 Fragaria x ananassa HOM05D001361 ORTHO05D002529 3.5e-07 57.8 56 58.9
CSS0038700 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 6.0e-07 57.0 59 50.8
Nn1g07359 Nelumbo nucifera HOM05D001361 ORTHO05D002529 7.8e-07 56.6 63 44.4
CSS0006201 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.0e-06 56.2 63 46.0
CSS0043997 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.0e-06 56.2 63 46.0
Migut.E00542 Erythranthe guttata HOM05D001361 ORTHO05D002529 1.0e-06 56.2 64 45.3
Lj2g0024699 Lotus japonicus HOM05D001361 ORTHO05D002529 1.3e-06 55.8 39 61.5
Dinv08702 Davidia involucrata HOM05D001361 ORTHO05D002529 2.3e-06 55.1 64 42.2
Os09g0482740 Oryza sativa ssp. japonica HOM05D001361 ORTHO05D002529 3.9e-06 54.3 62 40.3
Sopen08g030960 Solanum pennellii HOM05D001361 ORTHO05D002529 3.9e-06 54.3 64 43.8
Eucgr.A01083 Eucalyptus grandis HOM05D001361 ORTHO05D002529 5.1e-06 53.9 63 38.1
Hma1.2p1_0133F.1_g060860 Hydrangea macrophylla HOM05D001361 ORTHO05D002529 5.1e-06 53.9 64 43.8
Lsat_1_v5_gn_9_105360 Lactuca sativa HOM05D001361 ORTHO05D002529 5.1e-06 53.9 63 44.4
unitig_22.g5611 Utricularia gibba HOM05D001361 ORTHO05D002529 5.1e-06 53.9 60 45.0
CAN.G567.33 Capsicum annuum HOM05D001361 ORTHO05D002529 6.6e-06 53.5 64 42.2
ClCG02G009670 Citrullus lanatus HOM05D001361 ORTHO05D002529 6.6e-06 53.5 65 43.1
Lj1C785T7 Lonicera japonica HOM05D001361 ORTHO05D002529 6.6e-06 53.5 64 43.8
PSO782G4495 Papaver somniferum HOM05D001361 ORTHO05D002529 6.6e-06 53.5 53 49.1
Solyc08g082730.4 Solanum lycopersicum HOM05D001361 ORTHO05D002529 6.6e-06 53.5 64 42.2
PGSC0003DMG400012257 Solanum tuberosum HOM05D001361 ORTHO05D002529 6.6e-06 53.5 64 42.2
TAR629G2435 Trochodendron aralioides HOM05D001361 ORTHO05D002529 8.6e-06 53.1 63 41.3


User provided reference genes

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