Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000399g0090 Nicotiana tabacum HOM05D005048 ORTHO05D006420 3.2e-234 814.7 409 100.0
Nitab4.5_0004090g0040 Nicotiana tabacum HOM05D005048 ORTHO05D006420 1.8e-224 782.3 409 95.4
CAN.G1379.35 Capsicum annuum HOM05D005048 ORTHO05D006420 3.4e-207 724.9 409 88.3
PGSC0003DMG400018273 Solanum tuberosum HOM05D005048 ORTHO05D006420 4.4e-207 724.5 409 89.2
Sopen01g044930 Solanum pennellii HOM05D005048 ORTHO05D006420 2.8e-206 721.8 409 89.0
Actinidia32670 Actinidia chinensis HOM05D005048 ORTHO05D006420 2.9e-182 642.1 411 77.4
GSVIVG01015352001 Vitis vinifera HOM05D005048 ORTHO05D006420 2.9e-182 642.1 410 76.8
Cc01_g04910 Coffea canephora HOM05D005048 ORTHO05D006420 2.3e-179 632.5 410 75.4
Solyc01g102490.3 Solanum lycopersicum HOM05D005048 ORTHO05D006420 2.1e-177 625.9 364 86.8
QL10p015858 Quercus lobata HOM05D005048 ORTHO05D006420 2.8e-177 625.5 410 74.1
Peaxi162Scf00231g00512 Petunia axillaris HOM05D005048 ORTHO05D006420 3.6e-177 625.2 410 79.0
Hma1.2p1_1151F.1_g261870 Hydrangea macrophylla HOM05D005048 ORTHO05D006420 1.4e-176 623.2 410 75.4
Gorai.001G007100 Gossypium raimondii HOM05D005048 ORTHO05D006420 4.9e-174 614.8 410 74.1
CiPaw.04G161700 Carya illinoinensis HOM05D005048 ORTHO05D006420 6.4e-174 614.4 410 72.9
MD02G1057100 Malus domestica HOM05D005048 ORTHO05D006420 6.4e-174 614.4 410 73.4
Haze_25781 Corylus avellana HOM05D005048 ORTHO05D006420 1.4e-173 613.2 418 72.2
Gohir.D07G007400 Gossypium hirsutum HOM05D005048 ORTHO05D006420 1.9e-173 612.8 410 73.7
Prupe.7G225700 Prunus persica HOM05D005048 ORTHO05D006420 1.9e-173 612.8 410 73.2
Gohir.A07G004800 Gossypium hirsutum HOM05D005048 ORTHO05D006420 4.2e-173 611.7 410 72.9
TWI60G0019 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 9.2e-173 610.5 412 73.3
TAR383G0565 Trochodendron aralioides HOM05D005048 ORTHO05D006420 9.2e-173 610.5 409 71.4
Migut.D01920 Erythranthe guttata HOM05D005048 ORTHO05D006420 1.6e-172 609.8 410 74.6
Rhsim03G0239600 Rhododendron simsii HOM05D005048 ORTHO05D006420 2.7e-172 609.0 418 71.8
Aqoxy5G01302 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 6.0e-172 607.8 410 71.7
RcHm_v2.0_Chr2g0091251 Rosa chinensis HOM05D005048 ORTHO05D006420 7.8e-172 607.4 410 73.2
Potri.017G118801 Populus trichocarpa HOM05D005048 ORTHO05D006420 1.7e-171 606.3 410 73.4
TWI81G0001 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 5.1e-171 604.7 412 72.6
Aqoxy1G00313 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 1.5e-170 603.2 404 72.3
Nn2g11663 Nelumbo nucifera HOM05D005048 ORTHO05D006420 2.5e-170 602.4 409 72.4
arahy.Tifrunner.gnm1.ann1.TTP0Q7 Arachis hypogaea HOM05D005048 ORTHO05D006420 4.3e-170 601.7 410 72.2
Ciclev10008139m.g Citrus clementina HOM05D005048 ORTHO05D006420 5.6e-170 601.3 404 72.5
FAN23G2083 Fragaria x ananassa HOM05D005048 ORTHO05D006420 5.6e-170 601.3 410 72.4
arahy.Tifrunner.gnm1.ann1.T6QICJ Arachis hypogaea HOM05D005048 ORTHO05D006420 9.6e-170 600.5 410 72.0
FvH4_1g05550 Fragaria vesca HOM05D005048 ORTHO05D006420 9.6e-170 600.5 410 72.4
Oeu026966.2 Olea europaea HOM05D005048 ORTHO05D006420 9.6e-170 600.5 410 72.9
ECA240G4205 Erigeron canadensis HOM05D005048 ORTHO05D006420 2.8e-169 599.0 409 71.1
FAN28G0981 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.1e-168 597.0 423 70.7
Thecc.09G106000 Theobroma cacao HOM05D005048 ORTHO05D006420 1.1e-168 597.0 410 71.7
Lj4g0020985 Lotus japonicus HOM05D005048 ORTHO05D006420 1.4e-168 596.7 409 71.6
Hund09223 Selenicereus undatus HOM05D005048 ORTHO05D006420 6.9e-168 594.3 410 71.0
TPR.G23489 Trifolium pratense HOM05D005048 ORTHO05D006420 1.2e-167 593.6 410 72.7
HanXRQChr03g0061391 Helianthus annuus HOM05D005048 ORTHO05D006420 3.4e-167 592.0 409 70.2
Sabra17G0098100 Salix brachista HOM05D005048 ORTHO05D006420 3.4e-167 592.0 435 68.5
Cfa003227 Carpinus fangiana HOM05D005048 ORTHO05D006420 9.9e-167 590.5 410 71.7
Lalb_Chr05g0223041 Lupinus albus HOM05D005048 ORTHO05D006420 1.3e-166 590.1 411 71.3
Ca_17323_v3 Cicer arietinum L. HOM05D005048 ORTHO05D006420 1.7e-166 589.7 410 72.9
Glyma.05G229400 Glycine max HOM05D005048 ORTHO05D006420 4.9e-166 588.2 394 72.6
AL7G19480 Arabidopsis lyrata HOM05D005048 ORTHO05D006420 1.1e-165 587.0 412 71.1
Aa31LG2G18290 Aethionema arabicum HOM05D005048 ORTHO05D006420 3.2e-165 585.5 404 70.8
PGR102G2767 Punica granatum HOM05D005048 ORTHO05D006420 4.2e-165 585.1 410 71.0
Eucgr.C03804 Eucalyptus grandis HOM05D005048 ORTHO05D006420 7.1e-165 584.3 406 71.2
Glyma.14G218300 Glycine max HOM05D005048 ORTHO05D006420 7.1e-165 584.3 394 72.3
BcaB08g35458 Brassica carinata HOM05D005048 ORTHO05D006420 9.3e-165 583.9 394 72.3
THA.LOC104799066 Tarenaya hassleriana HOM05D005048 ORTHO05D006420 9.3e-165 583.9 406 70.9
CsaV3_3G010630 Cucumis sativus L. HOM05D005048 ORTHO05D006420 2.7e-164 582.4 410 69.8
EL10Ac8g18435 Beta vulgaris HOM05D005048 ORTHO05D006420 3.5e-164 582.0 447 64.7
Medtr8g103060 Medicago truncatula HOM05D005048 ORTHO05D006420 4.6e-164 581.6 395 72.9
FAN19G2567 Fragaria x ananassa HOM05D005048 ORTHO05D006420 2.3e-163 579.3 410 71.2
Sp7g30130 Schrenkiella parvula HOM05D005048 ORTHO05D006420 3.0e-163 578.9 404 71.8
SalBow2G2764 Salvia bowleyana HOM05D005048 ORTHO05D006420 1.9e-162 576.2 409 71.4
PSO210G2605 Papaver somniferum HOM05D005048 ORTHO05D006420 7.3e-162 574.3 434 66.1
MELO3C006282.2 Cucumis melo HOM05D005048 ORTHO05D006420 1.3e-161 573.5 410 68.8
Dinv36669 Davidia involucrata HOM05D005048 ORTHO05D006420 1.6e-161 573.2 368 76.1
Cpa.g.sc23.64 Carica papaya HOM05D005048 ORTHO05D006420 3.1e-160 568.9 423 67.1
Thhalv10013379m.g Eutrema salsugineum HOM05D005048 ORTHO05D006420 3.1e-160 568.9 409 69.9
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 5.3e-160 568.2 395 71.4
ClCG05G003020 Citrullus lanatus HOM05D005048 ORTHO05D006420 5.3e-160 568.2 418 67.9
Lsat_1_v5_gn_7_41421 Lactuca sativa HOM05D005048 ORTHO05D006420 1.2e-159 567.0 398 69.3
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 4.5e-159 565.1 395 71.1
COL.COLO4_37106 Corchorus olitorius HOM05D005048 ORTHO05D006420 5.8e-159 564.7 444 66.0
Carub.0007s0821 Capsella rubella HOM05D005048 ORTHO05D006420 2.2e-158 562.8 411 68.4
C09p39250 Brassica napus HOM05D005048 ORTHO05D006420 1.1e-157 560.5 393 70.0
BolC9t56804H Brassica oleracea HOM05D005048 ORTHO05D006420 1.1e-157 560.5 393 70.0
SGA_v2.0_scaffold58G20419 Striga asiatica HOM05D005048 ORTHO05D006420 1.2e-156 557.0 404 70.3
VMungo0251G3001 Vigna mungo HOM05D005048 ORTHO05D006420 1.2e-156 557.0 461 62.5
Os02g0277600 Oryza sativa ssp. japonica HOM05D005048 ORTHO05D006420 6.7e-155 551.2 392 68.1
Duzib168G1040 Durio zibethinus HOM05D005048 ORTHO05D006420 2.5e-154 549.3 410 67.3
HPP92_003926 Vanilla planifolia HOM05D005048 ORTHO05D006420 3.7e-153 545.4 407 65.1
unitig_0.g799 Utricularia gibba HOM05D005048 ORTHO05D006420 2.4e-152 542.7 407 67.6
vmacro06232 Vaccinium macrocarpon HOM05D005048 ORTHO05D006420 9.9e-151 537.3 418 66.0
ATR0315G096 Amborella trichopoda HOM05D005048 ORTHO05D006420 4.9e-150 535.0 410 64.6
Zm00001eb203380 Zea mays HOM05D005048 ORTHO05D006420 1.2e-148 530.4 398 65.1
Ah.14g082380 Amaranthus hybridus HOM05D005048 ORTHO05D006420 2.8e-145 519.2 406 65.0
AT4G32360 Arabidopsis thaliana HOM05D005048 ORTHO05D006420 9.0e-144 514.2 363 70.5
BcaC04g20784 Brassica carinata HOM05D005048 ORTHO05D006420 2.1e-140 503.1 392 64.3
Mapoly0125s0046 Marchantia polymorpha HOM05D005048 ORTHO05D006420 2.3e-139 499.6 390 64.4
DCAR_009632 Daucus carota HOM05D005048 ORTHO05D006420 3.0e-139 499.2 328 75.0
Zm00001eb203400 Zea mays HOM05D005048 ORTHO05D006420 2.5e-138 496.1 370 65.4
AUR62021458 Chenopodium quinoa HOM05D005048 ORTHO05D006420 5.7e-138 495.0 433 58.9
Pp3c9_14820 Physcomitrium patens HOM05D005048 ORTHO05D006420 1.3e-137 493.8 403 62.0
Sc08g0007680 Simmondsia chinensis HOM05D005048 ORTHO05D006420 3.7e-137 492.3 341 70.4
Phvul.002G311600 Phaseolus vulgaris HOM05D005048 ORTHO05D006420 1.1e-130 470.7 339 69.3
Manes.14G158111 Manihot esculenta HOM05D005048 ORTHO05D006420 1.1e-128 464.2 333 70.0
Sed0003567 Sechium edule HOM05D005048 ORTHO05D006420 1.4e-128 463.8 338 67.8
CBR_g50003 Chara braunii HOM05D005048 ORTHO05D006420 1.2e-127 460.7 390 57.7
Atru.chr7.1383 Acer truncatum HOM05D005048 ORTHO05D006420 5.0e-126 455.3 301 73.8
MBI01_g38807_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 2.5e-125 453.0 336 67.6
CSS0046369 Camellia sinensis var. sinensis HOM05D005048 ORTHO05D006420 4.2e-125 452.2 301 74.4
MBI01_g29840_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 7.9e-124 448.0 399 60.9
SMO361G0652 Selaginella moellendorffii HOM05D005048 ORTHO05D006420 2.3e-123 446.4 387 58.9
PSO210G5559 Papaver somniferum HOM05D005048 ORTHO05D006420 2.5e-117 426.4 301 69.8
SHI02718 Sapria himalayana HOM05D005048 ORTHO05D006420 1.2e-116 424.1 317 65.6
Psat7g014800 Pisum sativum HOM05D005048 ORTHO05D006420 3.7e-113 412.5 289 73.0
AagrBONN_evm.TU.Sc2ySwM_344.4229 Anthoceros agrestis HOM05D005048 ORTHO05D006420 7.0e-112 408.3 342 63.2
Dinv41630 Davidia involucrata HOM05D005048 ORTHO05D006420 3.5e-111 406.0 269 76.2
SEGI_35536 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 3.5e-111 406.0 358 60.1
MD15G1191600 Malus domestica HOM05D005048 ORTHO05D006420 1.3e-110 404.1 280 71.8
Cre13.g562550 Chlamydomonas reinhardtii HOM05D005048 ORTHO05D006420 7.5e-106 388.3 433 48.5
Zm00001eb203390 Zea mays HOM05D005048 ORTHO05D006420 1.3e-105 387.5 304 63.5
MCO04G387 Micromonas commoda HOM05D005048 ORTHO05D006420 3.5e-95 352.8 405 47.4
Lj7C657T3 Lonicera japonica HOM05D005048 ORTHO05D006420 1.7e-94 350.5 205 82.0
FAN26G2936 Fragaria x ananassa HOM05D005048 ORTHO05D006420 3.3e-93 346.3 241 73.0
CARHR240280 Cardamine hirsuta HOM05D005048 ORTHO05D006420 3.4e-90 336.3 242 70.2
Oeu035980.2 Olea europaea HOM05D005048 ORTHO05D006420 2.3e-86 323.6 372 51.3
MBI01_g28841_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 4.0e-83 312.8 256 63.3
Cfa027289 Carpinus fangiana HOM05D005048 ORTHO05D006420 1.5e-74 284.3 404 39.9
FvH4_1g05561 Fragaria vesca HOM05D005048 ORTHO05D006420 1.7e-73 280.8 322 48.4
Haze_26375 Corylus avellana HOM05D005048 ORTHO05D006420 1.2e-71 274.6 409 41.8
FAN26G3268 Fragaria x ananassa HOM05D005048 ORTHO05D006420 9.5e-69 265.0 169 73.4
PRCOL_00004495 Prasinoderma coloniale HOM05D005048 ORTHO05D006420 2.1e-68 263.8 467 39.0
CARHR240270 Cardamine hirsuta HOM05D005048 ORTHO05D006420 2.4e-64 250.4 158 74.1
CDE05G1289 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 7.1e-56 222.2 181 60.2
CDE05G1414 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 4.4e-50 203.0 411 34.8
MD15G1191500 Malus domestica HOM05D005048 ORTHO05D006420 9.3e-48 195.3 144 65.3
CDE05G2817 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 2.9e-41 173.7 112 73.2
Rhsim02G0216900 Rhododendron simsii HOM05D005048 ORTHO05D006420 3.9e-38 163.3 147 56.5
SGA_v2.0_scaffold29G12330 Striga asiatica HOM05D005048 ORTHO05D019217 1.5e-34 151.4 116 63.8
Duzib150G0221 Durio zibethinus HOM05D005048 ORTHO05D006420 9.3e-32 142.1 113 63.7
AUR62010945 Chenopodium quinoa HOM05D005048 ORTHO05D006420 1.1e-29 135.2 79 74.7
FvH4_1g05600 Fragaria vesca HOM05D005048 ORTHO05D006420 1.6e-28 131.3 175 50.3
AUR62007677 Chenopodium quinoa HOM05D000716 ORTHO05D008300 2.8e-20 104.0 57 77.2
Glyma.08G036802 Glycine max HOM05D005048 ORTHO05D006420 2.8e-20 104.0 66 69.7
Lj7C657T4 Lonicera japonica HOM05D005048 ORTHO05D006420 2.6e-18 97.4 77 62.3
SEGI_20206 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 1.0e-17 95.5 110 49.1
FAN28G0458 Fragaria x ananassa HOM05D005048 ORTHO05D006420 2.2e-17 94.4 75 60.0
SGA_v2.0_scaffold7G04123 Striga asiatica HOM05D005048 ORTHO05D006420 9.4e-16 89.0 82 57.3
SEGI_24932 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 9.7e-13 79.0 59 67.8
MBI14_g17788_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 1.1e-11 75.5 50 72.0
SHI02717 Sapria himalayana HOM05D005048 ORTHO05D012697 2.4e-11 74.3 49 69.4
CBR_g18717 Chara braunii HOM05D001433 ORTHO05D005019 4.1e-11 73.6 126 34.1
Cpa.g.sc12.33 Carica papaya HOM05D005048 ORTHO05D006420 2.0e-10 71.2 118 36.4
ClCG05G008840 Citrullus lanatus HOM05D001433 ORTHO05D005019 2.2e-09 67.8 163 31.3
MELO3C008481.2 Cucumis melo HOM05D001433 ORTHO05D005019 2.9e-09 67.4 164 31.7
CBR_g18711 Chara braunii HOM05D001433 ORTHO05D005019 3.8e-09 67.0 121 33.9
Pp3c10_8200 Physcomitrium patens HOM05D001433 ORTHO05D005019 7.2e-08 62.8 122 32.0
SalBow4G0367 Salvia bowleyana HOM05D001433 ORTHO05D005019 1.2e-07 62.0 122 32.8
SalBow4G2448 Salvia bowleyana HOM05D001433 ORTHO05D005019 1.2e-07 62.0 122 32.8
CAN.G303.50 Capsicum annuum HOM05D001433 ORTHO05D005019 1.6e-07 61.6 161 28.0
Pp3c14_8740 Physcomitrium patens HOM05D001433 ORTHO05D005019 2.1e-07 61.2 122 32.0
Rhsim03G0207200 Rhododendron simsii HOM05D001433 ORTHO05D005019 2.1e-07 61.2 124 34.7
Oeu035977.1 Olea europaea HOM05D005048 ORTHO05D006420 2.7e-07 60.8 48 62.5
SMO302G0002 Selaginella moellendorffii HOM05D001433 ORTHO05D005019 2.7e-07 60.8 163 30.1
SMO353G0329 Selaginella moellendorffii HOM05D001433 ORTHO05D005019 2.7e-07 60.8 163 30.1
vmacro06546 Vaccinium macrocarpon HOM05D001433 ORTHO05D005019 2.7e-07 60.8 163 27.0
BraA03t10937Z Brassica rapa HOM05D005048 ORTHO05D028090 1.0e-06 58.9 72 44.4
Mapoly0002s0330 Marchantia polymorpha HOM05D001433 ORTHO05D005019 1.8e-06 58.2 170 28.2
FvH4_1g05581 Fragaria vesca HOM05D005048 ORTHO05D198222 5.1e-06 56.6 127 34.6
A03p16480 Brassica napus HOM05D005048 ORTHO05D028090 8.8e-06 55.8 64 45.3


User provided reference genes

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