Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.9e-229 798.5 490 100.0
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.3e-160 570.5 417 80.1
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.2e-158 563.9 413 80.9
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.5e-157 558.1 395 85.8
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 5.5e-140 501.9 413 74.1
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.9e-127 460.3 464 61.9
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.1e-127 459.1 464 62.3
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.7e-112 410.6 507 55.6
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 2.9e-104 383.3 516 52.5
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.9e-100 370.5 298 72.8
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 6.2e-99 365.5 537 49.9
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 6.9e-98 362.1 537 49.7
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 7.4e-92 342.0 426 54.2
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 5.5e-87 325.9 415 53.7
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.3e-85 321.2 424 53.5
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.9e-85 319.7 331 59.5
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.5e-81 307.8 417 50.6
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.6e-81 307.0 407 49.1
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.3e-80 304.7 439 51.0
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.3e-80 304.7 416 50.0
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 8.4e-80 302.0 391 49.1
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.5e-76 291.2 459 47.5
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 5.7e-76 289.3 424 50.7
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.6e-75 287.7 377 48.8
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.5e-73 281.2 420 49.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.1e-71 275.0 423 46.3
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 6.1e-70 269.2 390 46.4
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 6.1e-70 269.2 417 48.7
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.9e-70 268.9 435 47.8
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 4.3e-68 263.1 438 44.5
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 9.7e-68 261.9 434 44.2
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.3e-67 261.5 420 43.8
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 4.8e-67 259.6 393 46.8
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 9.0e-66 255.4 400 47.0
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 2.0e-65 254.2 470 44.5
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.6e-65 253.8 421 46.6
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 4.5e-65 253.1 362 47.5
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 5.9e-65 252.7 412 45.1
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.3e-64 251.5 393 43.8
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.2e-64 250.8 384 44.8
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 2.9e-64 250.4 475 43.6
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.1e-62 244.2 418 45.2
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.4e-61 241.5 394 43.7
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.0e-61 240.4 413 43.1
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 6.7e-61 239.2 417 46.8
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 6.7e-61 239.2 417 46.8
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.1e-60 238.4 428 46.3
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 2.0e-60 237.7 417 43.2
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 2.0e-60 237.7 417 43.2
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 2.5e-60 237.3 394 42.9
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 8.2e-59 232.3 389 42.7
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 3.1e-58 230.3 460 43.5
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.5e-57 228.0 416 46.4
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 2.0e-57 227.6 381 40.9
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 3.4e-57 226.9 412 42.7
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.3e-56 224.9 387 44.4
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.7e-56 224.6 454 42.7
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 2.2e-56 224.2 366 44.8
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 8.5e-56 222.2 448 42.9
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 8.5e-56 222.2 445 40.2
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.9e-55 221.1 350 47.7
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 2.5e-55 220.7 460 38.0
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.6e-54 218.0 396 41.2
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 2.3e-53 214.2 476 36.8
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 5.1e-53 213.0 454 39.0
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.0e-52 211.1 469 38.0
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 2.6e-52 210.7 454 41.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 2.6e-52 210.7 492 36.4
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.3e-52 210.3 343 47.8
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 5.7e-52 209.5 371 41.5
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 7.4e-52 209.1 420 39.3
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.3e-51 208.4 442 40.3
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 2.2e-51 207.6 483 39.5
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 6.3e-51 206.1 386 43.0
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 6.3e-51 206.1 385 43.6
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 4.1e-50 203.4 367 42.0
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 9.1e-50 202.2 417 39.8
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.2e-49 201.8 500 35.8
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.0e-49 201.1 490 38.4
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 5.9e-49 199.5 499 35.7
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.0e-48 198.7 375 40.5
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.7e-48 198.0 512 37.9
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.7e-48 198.0 428 42.3
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.8e-48 196.8 459 39.7
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 5.0e-48 196.4 392 38.5
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 8.5e-48 195.7 493 38.1
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 4.2e-47 193.4 469 36.9
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.6e-46 191.4 392 38.8
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.6e-46 191.4 392 38.8
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 4.7e-46 189.9 415 38.6
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 4.7e-46 189.9 408 38.0
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 6.1e-46 189.5 446 39.2
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.3e-45 187.6 491 35.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.0e-45 187.2 406 37.4
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.5e-44 184.9 404 38.4
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 2.6e-44 184.1 405 36.3
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 4.4e-44 183.3 390 39.2
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.7e-43 181.4 491 39.3
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 2.8e-43 180.6 398 39.2
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.2e-43 179.1 303 45.2
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 3.1e-42 177.2 376 38.6
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 9.1e-42 175.6 503 38.0
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.6e-41 174.9 415 36.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.9e-41 172.9 503 38.0
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 5.9e-41 172.9 458 35.8
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.7e-40 171.4 424 35.1
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 3.8e-40 170.2 277 46.2
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 5.0e-40 169.9 442 39.8
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 8.5e-40 169.1 468 34.6
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 2.7e-38 164.1 513 35.5
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 3.6e-38 163.7 450 33.3
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.5e-36 156.0 444 34.9
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 3.7e-35 153.7 555 30.5
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 4.1e-34 150.2 545 32.5
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 3.5e-33 147.1 475 32.4
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 1.0e-32 145.6 465 35.9
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.3e-32 145.2 533 32.6
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.3e-32 145.2 465 31.8
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 5.0e-32 143.3 369 35.5
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 1.5e-31 141.7 483 31.7
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 1.5e-31 141.7 477 31.4
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 5.5e-31 139.8 470 32.1
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.2e-30 138.7 503 33.0
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.6e-30 137.1 476 31.3
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.6e-30 137.1 189 46.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 4.7e-30 136.7 487 31.4
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 4.7e-30 136.7 487 31.4
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 2.3e-29 134.4 204 46.1
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 2.3e-29 134.4 374 34.2
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 5.2e-29 133.3 413 32.9
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 5.2e-29 133.3 476 29.8
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 4.4e-28 130.2 431 33.4
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 9.8e-28 129.0 423 34.8
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 4.9e-27 126.7 414 30.2
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 6.3e-27 126.3 425 33.4
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.4e-26 125.2 493 30.2
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 7.0e-26 122.9 521 29.6
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 9.2e-26 122.5 490 29.8
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.0e-24 119.0 402 33.3
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.8e-24 117.1 132 52.3
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 5.0e-24 116.7 501 30.3
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 8.6e-24 115.9 339 33.9
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 6.8e-21 106.3 387 30.7
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 9.8e-20 102.4 129 50.4
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.9e-19 100.9 477 26.0
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 4.9e-19 100.1 421 34.2
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 8.3e-19 99.4 425 31.5
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 8.3e-19 99.4 416 33.7
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.8e-18 98.2 495 26.3
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 3.5e-17 94.0 138 47.8
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 5.9e-17 93.2 216 36.1
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.0e-16 92.4 89 61.8
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 8.6e-16 89.4 423 33.1
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.9e-15 88.2 419 32.5
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 2.5e-15 87.8 309 30.4
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 7.3e-15 86.3 496 26.0
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 2.1e-14 84.7 414 28.7
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.6e-14 84.0 422 32.9
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.7e-14 83.6 409 29.1
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 8.0e-14 82.8 465 27.1
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.3e-13 81.3 387 29.7
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 8.9e-13 79.3 253 34.0
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 4.4e-12 77.0 91 57.1
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.2e-11 74.7 513 24.4
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 2.2e-11 74.7 404 27.0
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 4.9e-11 73.6 381 28.6
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.4e-10 72.0 362 28.5
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 7.8e-09 66.2 388 24.7
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 5.0e-08 63.5 432 25.0
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 3.3e-07 60.8 390 25.4
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 1.2e-06 58.9 116 37.1
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 1.2e-06 58.9 410 26.6
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.2e-06 58.9 104 38.5
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.6e-06 58.5 392 27.0
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.6e-06 58.5 194 30.9


User provided reference genes

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