Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.9e-48 194.9 98 100.0
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.2e-32 142.1 90 82.2
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 4.8e-27 124.4 90 73.3
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 4.8e-27 124.4 90 73.3
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 2.4e-26 122.1 90 70.0
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 3.1e-26 121.7 90 70.0
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.6e-25 118.6 75 81.3
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.0e-21 106.7 75 72.0
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 8.8e-21 103.6 90 62.2
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 1.5e-20 102.8 75 69.3
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 2.6e-20 102.1 92 59.8
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 5.7e-20 100.9 88 63.6
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 5.7e-20 100.9 92 60.9
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 9.7e-20 100.1 75 68.0
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.3e-19 99.8 75 68.0
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 2.2e-19 99.0 90 56.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 2.2e-19 99.0 92 59.8
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 3.7e-19 98.2 90 62.2
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.7e-19 98.2 76 67.1
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 4.8e-19 97.8 92 60.9
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 4.8e-19 97.8 92 60.9
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.4e-18 96.3 76 65.8
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 9.1e-18 93.6 77 62.3
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 9.1e-18 93.6 75 65.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.2e-17 93.2 95 55.8
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.6e-17 92.8 76 67.1
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.6e-17 92.8 75 64.0
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.6e-17 92.8 75 64.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.6e-17 92.8 75 64.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.6e-17 92.8 94 55.3
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 7.7e-17 90.5 75 64.0
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 1.5e-15 86.3 75 60.0
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 4.2e-15 84.7 77 61.0
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 7.2e-15 84.0 91 53.8
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 9.4e-15 83.6 90 54.4
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 9.4e-15 83.6 90 51.1
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 9.4e-15 83.6 90 51.1
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.6e-14 82.8 91 51.6
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.1e-14 82.4 76 61.8
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.1e-14 82.4 90 56.7
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 2.1e-14 82.4 91 51.6
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 2.1e-14 82.4 92 51.1
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 2.1e-14 82.4 75 60.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.7e-14 82.0 73 57.5
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 2.7e-14 82.0 90 50.0
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 4.7e-14 81.3 90 48.9
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 6.1e-14 80.9 86 53.5
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 6.1e-14 80.9 90 51.1
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.1e-14 80.9 91 51.6
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 8.0e-14 80.5 76 63.2
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 1.4e-13 79.7 92 48.9
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.4e-13 79.7 91 53.8
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.8e-13 79.3 76 59.2
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.8e-13 79.3 91 56.0
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 2.3e-13 79.0 75 60.0
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.3e-13 79.0 97 48.5
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.3e-13 79.0 90 51.1
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 2.3e-13 79.0 77 55.8
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.3e-13 79.0 80 57.5
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 3.0e-13 78.6 91 50.5
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 4.0e-13 78.2 91 47.3
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 4.0e-13 78.2 91 52.7
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 5.2e-13 77.8 76 55.3
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 6.8e-13 77.4 75 60.0
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 6.8e-13 77.4 91 50.5
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.8e-13 77.4 75 58.7
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 6.8e-13 77.4 91 51.6
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.5e-12 76.3 76 56.6
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.5e-12 76.3 75 58.7
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 2.0e-12 75.9 77 54.5
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.0e-12 75.9 75 54.7
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.0e-12 75.9 76 55.3
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 2.6e-12 75.5 70 61.4
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.6e-12 75.5 75 56.0
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 3.4e-12 75.1 93 45.2
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 3.4e-12 75.1 81 55.6
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 3.4e-12 75.1 91 49.5
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 3.4e-12 75.1 76 55.3
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 4.4e-12 74.7 90 47.8
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 4.4e-12 74.7 91 50.5
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 5.7e-12 74.3 91 48.4
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 5.7e-12 74.3 91 47.3
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 5.7e-12 74.3 86 46.5
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 5.7e-12 74.3 91 51.6
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.7e-12 74.3 91 46.2
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 5.7e-12 74.3 90 47.8
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 5.7e-12 74.3 75 54.7
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 7.5e-12 73.9 90 47.8
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 7.5e-12 73.9 75 52.0
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 7.5e-12 73.9 90 51.1
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 9.8e-12 73.6 75 52.0
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 9.8e-12 73.6 75 53.3
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 9.8e-12 73.6 93 48.4
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 9.8e-12 73.6 75 53.3
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 9.8e-12 73.6 91 49.5
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 1.3e-11 73.2 76 55.3
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 1.7e-11 72.8 75 53.3
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.7e-11 72.8 77 54.5
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 1.7e-11 72.8 75 53.3
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.7e-11 72.8 91 49.5
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.7e-11 72.8 90 48.9
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 2.2e-11 72.4 91 50.5
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 2.2e-11 72.4 93 48.4
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 2.2e-11 72.4 93 48.4
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.2e-11 72.4 90 45.6
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.8e-11 72.0 75 53.3
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 2.8e-11 72.0 78 51.3
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.8e-11 72.0 76 56.6
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.8e-11 72.0 76 56.6
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.7e-11 71.6 76 56.6
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 3.7e-11 71.6 93 47.3
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.7e-11 71.6 92 46.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 6.3e-11 70.9 90 46.7
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 6.3e-11 70.9 75 49.3
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 6.3e-11 70.9 90 46.7
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.3e-11 70.9 76 56.6
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 8.3e-11 70.5 93 46.2
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 8.3e-11 70.5 97 43.3
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.1e-10 70.1 76 55.3
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.1e-10 70.1 76 52.6
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.1e-10 70.1 65 56.9
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.8e-10 69.3 90 43.3
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 2.4e-10 68.9 75 48.0
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.4e-10 68.9 66 57.6
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.4e-10 68.9 66 57.6
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.1e-10 68.6 76 55.3
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.1e-10 68.6 75 50.7
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 4.1e-10 68.2 91 46.2
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 5.4e-10 67.8 72 55.6
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 1.2e-09 66.6 91 44.0
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.2e-09 66.6 71 54.9
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.6e-09 66.2 90 43.3
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 2.0e-09 65.9 88 44.3
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 2.0e-09 65.9 91 46.2
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.3e-08 63.2 102 39.2
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.3e-08 63.2 49 65.3
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.9e-07 59.3 50 54.0
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.5e-07 58.9 36 69.4
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 3.6e-06 55.1 37 64.9


User provided reference genes

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